AlphaFold2 workshop 17 January 2024

Introduction

The workshop took place on the central campus on the 17th of January 2024.

Program

9:00 - 9:15 Welcome and introduction

9:15 - 10:00 AlphaLink: Integrating experimental distance restraints in AlphaFold2 structure prediction, Dr. Andrea Graziadei (Human Technopole, Milan)

10:00 - 10:45 Using AlphaFold2 to study the consequences of human genetics and the evolution of the protein universe, Prof. Pedro Beltrao (Department of Biology, ETH Zurich)

10:45 - 11:00 Break

11:00 - 11:45 Using AlphaFold2 to predict protein complexes: What worked and what did not, Prof. Stephanie Jonas (Department of Biology, ETH Zurich)

Lunch break

13:30 - 14:15 Understanding the AlphaFold2 workflow and its output, Dr. Simon Rüdisser (Department of Biology, ETH Zurich)

14:15 - 15:00 Hands-on session with the AlphaFold2 Jupyter notebook on JupyterHub and the demonstration of the submission of AlphaFold2 jobs on the command line

15:00 - 15:45 AlphaFold2 on Euler: Best practices, Dr. Nadejda Marounina (Scientific IT Services, ETH Zurich)

Slides

Please use the links in the schedule above. Some slides have not been shared because the presentations were containing unpublished results