View source for Blast++/Batch

You can submit a blast+ job in batch mode with the following command:

 sbatch [Slurm options] --wrap="[blast executable] [blast options]"

Here you need to replace ''[blast executable]'' with one of the following executables:

 [sfux@eu-login-05 bin]$ '''ls'''
 blastdb_aliastool  blastn             deltablast        makembindex           rpstblastn  tblastn
 blastdbcheck       blastp             dustmasker        makeprofiledb         seedtop     tblastx
 blastdbcmd         blastx             gene_info_reader  project_tree_builder  segmasker   update_blastdb.pl
 blastdbcp          convert2blastmask  legacy_blast.pl   psiblast              seqdb_demo  windowmasker
 blast_formatter    datatool           makeblastdb       rpsblast              seqdb_perf  windowmasker_2.2.22_adapter.py

Further more, you need to replace [blast options] with blast command line options and ''[Slurm options]'' with Slurm parameters for the resource requirements of the job. Please find a documentation about the parameters of <tt>sbatch</tt>  on the wiki page about the [[Using_the_batch_system|batch system]].