Brutus applications

The currently available modules on Brutus are presented in the following table, with the following typographic convention:

• Bold version numbers are the current default
• Italic supported version numbers will be moved to legacy
• Italic new versions will be moved to supported
• Crossed-out versions will be removed
• Underlined versions will be the new defaults

Application	Category	Module name	Legacy versions	Supported versions	New versions	Notes
7zip	Compression	7zip		9.20.1
Abaqus	FEA	abaqus	6.10-1b‌6.10-EF1‌6.11-1‌6.9-1	6.13-2‌6.14-1
ABINIT	Chemistry	abinit		7.0.1‌7.10.1‌7.8.2	7.10.1_pureMKL‌test_7_10_1
ADF	Chemistry	adf	2010.02b	2012.01‌2013.01
ALPS	Library	alps		2.1.1
AMD APP SDK	GPU	amd-app-sdk		2.8
ANSYS	Simulation	ansys	12.1	13.0‌14.0‌14.5		Ansys 12.1 features no longer supported by license server
Apache Ant	Development	ant		1.9.4
arch		arch		x86_64-k10‌x86_64-k8sse3		Internal. Do not use.
Autoconf	Development	autoconf		2.69
BERT	Modelling	bert		2.0
bioconductor		bioconductor			3.1
Netlib BLAS	Library	blas	2011-04-19			OpenBLAS is preferred.
BLAST	Bioinformatics	blast	2.2.20	2.2.25‌2.2.26
Blender	Visualization	blender		2.69
Blitz++	Library	blitz		0.9.3
Boost	Library	boost	1.49.0	1.51.0‌1.54.0
bowtie		bowtie		20140721
CellProfiler	Biology	cellprofiler		2.0.0_r5cacf‌2.1.1
cern-root		cern-root		5.34.05	5.34.18
ANSYS CFX	CFD	cfx	12.1	13.0‌14.0‌14.5		Ansys 12.1 features no longer supported by license server
CHARM	Development	charm		6.2.1
CHARMM	Chemistry	charmm		c38b1‌c39b1		Only for licenced users.
CMake	Development	cmake		2.8.12‌2.8.7	3.3.1
COMSOL Multiphysics	Physics	comsol	4.2a‌4.3‌4.3a‌4.3b	4.4‌5.1
CP2K	Chemistry	cp2k	2.3.12230‌2.3.12275‌2.4.12431‌2.4.12993‌trunk.2.5.13191	2.3‌trunk.13711	trunk.13661
cruft		cruft		1.0
CUDA	GPU	cuda	5.0	4.29		Versions 5.0 and greater are unstable.
DAMASK	Simulation	damask		2555
DRMAA for LSF	Library	drmaa		1.0.4‌1.0.4_vipin
MSC Dytran	FEA	dytran		2012.1
Eigen	Library	eigen		3.2.1
Quantum ESPRESSO	Chemistry	espresso	4.3.2_openmpi	5.0.2_openmpi‌5.0.2_patched_openmpi
fds-smv	Simulation	fds		svn16052013
fdsim		fdsim		1
FDTD	Physics	fdtd		8.5.3
FFmpeg	Video	ffmpeg	0.10.0	1.0.1
FFTW	Library	fftw	2.1.5‌3.3‌both‌sp	3.3.3
FFTW single-precision	Library	fftw_sp	1‌2.1.5‌3.3	3.3.3
ANSYS FLUENT	CFD	fluent	12.1	13.0‌14.0‌14.5		Ansys 12.1 features no longer supported by license server
FSL	Library	fsl		5.0.2	5.0.8
GAMESS (US)	Chemistry	gamess		2011_R1_serial‌2012_R2_MVAPICH2
Gaussian	Chemistry	gaussian	03	09‌09c1‌09c1_nbo59‌09d1		Access upon request.
GNU GCC	Development	gcc	4.6.2‌4.7.0	4.4.6‌4.7.2‌4.8.2‌4.9.2	4.8.4‌5.2.0
gdal		gdal			2.0.1
git	Development	git		1.9.0
GLPK	Library	glpk			4.45
GNU MP Bignum Library	Library	gmp			4.3.2
GMT	Geography	gmt		4.5.9
GNU GCC libraries		gnu		lib_4.8.2		GCC runtime environment.
Go Language	Development	golang	1.0.3	1.1
Goto BLAS	Library	goto2	1.06_par‌1.06_seq			OpenBLAS is preferred.
Grace	Graphics	grace		5.1.22
Gromacs	Chemistry	gromacs		4.5.5‌5.0.2	5.0.2_plumed
GSL	Library	gsl		1.13‌1.15
Gurobi	Mathematics	gurobi		5.6.3
guse		guse		20130215‌20140210‌20140808‌20150319
hadoop	Big-Data	hadoop		2.6.0
HDF5	Library	hdf5	1.8.0‌1.8.8	1.8.12
HDF5 (parallel)	Library	hdf5_para	1.8.0‌1.8.8‌1.8.8_sharedlib			Superseded by hdf5/1.8.12
ANSYS ICEMCFD	CFD	icemcfd	12.1	13.0‌14.0‌14.5		Ansys 12.1 features no longer supported by license server
IDL	Visualization	idl		8.2
imsbtools		imsbtools		20120119‌20120904‌20120917‌20130215‌20130916‌20130927‌20131101‌20140210‌20140210_swath‌20140311‌20140808‌20140808_swath‌20150319‌20150319_dev‌20150319_swath‌aqua_dev
Intel Composer	Development	intel	10.1.018‌11.1.069‌12.1.2‌13.0.0	13.1.1‌14.0.0‌15.0.0
Java	Development	java		1.6.0_31‌1.7.0_03‌1.8.0_05
Jmol	Visualization	jmol		13
Jython	Development	jython		2.5.2
LAMMPS	Chemistry	lammps	2012-04-20‌2013-04-03‌2013-12-01	2013-05-26‌2014-02-01‌2015-08-10	2015-05-15
Netlib LAPACK	Library	lapack	3.4.0			OpenBLAS is preferred.
PDF	Physics	lhapdf		5.8.7‌5.8.9
Libint	Library	libint		1.1.4
LLVM	Development	llvm	3.1‌3.2	3.4.2	3.6.0
Maple	Mathematics	maple	15	16‌17
MSC Marc	FEA	marc	2012	2013‌2013.1
Mathematica	Mathematics	mathematica		8.0.4
MATLAB	Numerical	matlab	7.11‌7.12‌7.13‌7.14‌8.0	8.1‌8.5	8.2‌8.4
maven		maven		3.3.1
ANSYS Maxwell	Physics	maxwell		15.0.1
MEncoder	Video	mencoder		2012_04_18
METIS	Mathematics	metis		4.0.3
MKL	Library	mkl	10.1.1.019‌11.1.069‌12.1.2‌13.0.0	13.1.1‌14.0.0	15.0.0
Molden	Visualization	molden		5.0
Molpro	Chemistry	molpro		2009.2‌2010.1
Mono .NET framework	Development	mono		3.0.7
GNU Multi-Precision Floating Point Library	Development	mpfr			3.1.2
MVAPICH2	MPI	mvapich2	1.5‌1.8a2	1.8.1	2.0‌2.0.1‌2.0b‌2.1
myrimatch		myrimatch		1.6.79‌20100622‌2.1.101‌2.1.106‌2.1.111‌2.1.114‌2.1.130‌2.1.138‌2.1.97
NAMD	Chemistry	namd		2.10‌2.8
MSC Nastran	FEA	nastran		2011.1‌2012.1
NBO	Chemistry	nbo		5.9
netCDF Operators	Data analysis	nco		4.2.1
netCDF	Library	netcdf	3.6.2‌4.1.1‌4.1.3‌4.3.0	4.3.1.1		Versions 4.3.1.1 support netCDF4/HDF5 parallel I/O.
ngspice	Physics	ngspice		24
NWChem	Chemistry	nwchem		6.1‌6.5
Octave	Numerical	octave		3.6.1
omssa		omssa		2.1.7‌2.1.9
Open64	Development	open64	5.0
OpenBLAS	Library	openblas	0.1.1_par‌0.1.1_seq‌0.2.4_par‌0.2.4_seq	0.2.8_par‌0.2.8_seq
OpenCV	Library	opencv			2.4.9
OpenFOAM	CFD	openfoam	2.0.1	2.1.1‌2.2.0‌2.2.1‌bd
openmesh		openmesh			5.0
Open MPI	MPI	open_mpi	1.4.5‌1.5.4‌1.6.0‌1.6.1‌1.6.2	1.6.5	1.10.0
openms		openms		1.10.0‌1.11.0‌1.8.0‌1.9.0‌2.0.0‌2.0.0-memory‌develop‌georger
ORCA	Chemistry	orca		2.8‌3.0.1
p4vasp	Chemistry	p4vasp		0.3.24
p5modules		p5modules		1209
PAPI	Profiling	papi		4.2.0
parallel_studio_xe		parallel_studio_xe			2015
MSC Patran	FEA	patran		2010.2‌2012
PGI Compiler	Development	pgi	10.9‌11.10‌12.3‌12.6‌12.9‌13.1	14.1‌15.1
PLUMED	Chemistry	plumed			2.1.0
pwiz		pwiz		2890‌3239
PyMOL	Visualization	pymol		1.4.1‌1.8.0
Python	Development	python		2.7.2‌3.2.2	2.7.6
Q-Chem	Chemistry	qchem	4.0.0.0.beta‌4.0.0.1.beta	4.0.1
QGIS	Geography	qgis		2.2.0	2.2.0p
Qt	Development	qt	4.6.2	4.8.2‌4.8.4
R Project	Numerical	r	2.14.1‌3.1.0	2.15.1‌3.0.0‌3.1.2	3.2.2
relion		relion			1.3
Rosetta	Biology	rosetta		3.1‌3.2‌3.3‌3.4‌r55036‌stable‌svn
Revolution R Enterprise	Mathematics	rre		7
saint		saint		2.3.4‌3.0.5‌3.1.0
Scala	Development	scala		2.11.6
ScaLAPACK	Library	scalapack		2.0.2
sequencing		sequencing		bowtie-0.12.9‌samtools-0.1.18‌seqtk_2012_Oct‌sra_sdk-2.2.0‌velvet_1.2.08
Spark	Big-Data	spark		1.3.1
splash	Visualization	splash		2.0
Stata	Mathematics	stata		11‌12‌13
SuiteSparse	Library	suitesparse		4.0.2
SWIG	Development	swig		1.3.40‌2.0.9
SZIP	Library	szip		2.1
tandem		tandem		090401‌101201
Tuning and Analysis Utilities	Profiling	tau		2.21.1
tctools		tctools		tc
TeX Live	Typesetting	texlive		2009
tpp		tpp		4.3.1‌4.4.0‌4.4.1‌4.5.0‌4.5.1‌4.5.2‌4.6.0‌4.7.0‌r5304‌r5366
Trilinos	Library	trilinos		11.0.2‌11.0.2_cuda	11.8.1
trimesh		trimesh			1.8.3
Turbomole	Chemistry	turbomole	5.10‌5.10_mpi‌5.1.8‌6.3.1‌6.3.1_mpi‌6.3.1_smp	6.4.0‌6.4.0_mpi‌6.4.0_smp‌7.0.2‌7.0.2_smp
UDUNITS	Library	udunits		2.1.24	2.2.18
unixODBC	Database	unixodbc			2.3.0
Valgrind	Profiling	valgrind		3.8.1
VASP	Chemistry	vasp		4.6 ‌ 4.6_gpo ‌ 4.6_vtst ‌5.2‌5.2_gpo‌5.2_vtst‌5.3		Only for license holders.
VisIt	Visualization	visit		2.6.3‌2.8.2‌current	2.7.2
VMD	Visualization	vmd		1.9.1
vtk		vtk		6.1.0
wfi		wfi		1
XCrySDen	Visualization	xcrysden		1.5.53
xerces		xerces		3.1.0‌3.1.1
xquest		xquest		2.1.1.pr‌2.1.2‌2.1.3‌2.1.3~‌trunk‌trunk~
yasm		yasm		1.20