Difference between old and new software stacks on Euler
From ScientificComputing
Revision as of 07:33, 24 September 2019 by Sfux (talk | contribs) (Created page with "We are using this page to track the difference between the old (environment modules) and new (LMOD modules) software stacks. The list contains all software that is available i...")
We are using this page to track the difference between the old (environment modules) and new (LMOD modules) software stacks. The list contains all software that is available in the old software stack but not in the new one.
Software not currently available in the new software stack
- abinit
- afni
- agi_photoscan
- alps
- amber
- amdis
- ants
- auto07p
- bioconductor
- cantera
- cdo
- cellprofiler
- charmm
- cst_microwave
- cyana
- dalton
- dirac
- elpa
- express
- falcon
- fix
- fox
- freefem
- ga
- gamess
- gmt
- gradle
- guse
- idl
- imsl
- jython
- leptonica
- lifev
- lsf_drmaa
- materialsstudio
- maxwell
- maxwellrender
- molden
- molpro
- movipac
- mpifileutils
- mrtrix3
- mvapich2
- myrimatch
- nbo
- ncview
- netlogo
- netMHCIIpan
- node
- ntl
- nwchem
- nxnastran
- octave
- omssa
- openbabel
- openfoam
- openmesh
- openms
- pcl
- pnetcdf
- psi4
- pwiz
- pyferret
- qgis
- quantum_espresso
- rosetta
- sage
- saint
- samri
- sprng
- sumo
- swmm
- tandem
- tesseract
- tpp
- transat
- vasp
- wgrib2
- xquest
GDC software not currently available in the new software stack
- admixtools
- allmaps
- amrfinderplus
- bayescan
- bfc
- bioconductor
- biojava
- blasr
- blasr_bam
- blobtools
- braker
- busco
- circos
- crisp
- defusion
- docent
- epiteome
- examl
- falcon
- falcon_phase
- fasta
- fastme
- fastp
- fastqscreen
- faststructure
- flappie
- fraggenescan
- freebayes
- gargammel
- gemma
- genemark
- genemark_es
- genomemapper
- genomethreader
- genometools
- genotan
- ghostz
- gmap
- graphmap
- gtdb-tk
- guppy
- halc
- hyphy
- imr
- instruct
- itsx
- jellyfish
- jitterbug
- kaiju
- kallisto
- kat
- kraken
- lastz
- ldhat
- ldhelmet
- ldhot
- lfmm
- lofreq
- lordec
- lorte
- ltrfinder
- macse
- maker
- masurca
- mccortex
- megahit
- meme
- meshclust2
- metabat
- metaphlan
- metavelvet
- metaxa2
- methyldackel
- migrate
- miniasm
- mmseqs2
- mocat
- mrbayes
- msmc
- msmc2
- mummer
- nanocall
- nanopolish
- ngsep
- ngsrelate
- ngstools
- opam
- ortho_finder
- pasapipeline
- pbmm2
- pcangsd
- phyla_amphora
- phylosift
- picard-tools
- pindel
- popoolation
- popoolation2
- primer3
- prinseq-lite
- prokka
- proovread
- qualimap
- quast
- quickmerge
- racon
- rad_haplotyper
- raxml-ng
- reads2snp
- redundans
- repeatmasker
- repeatmodeler
- ribopicker
- rmblast
- rsem
- rtg-tools
- salmon
- salmonte
- salsa
- samblaster
- segemehl
- se-mei
- seqkit
- seqprep
- sga
- shapeit
- shore
- smrt_analysis
- smrt_link
- snap
- snippy
- snpeff
- snpgenie
- soapdenovo2
- sonics
- sortmerna
- spaunge
- sra-tools
- stacks
- stampy
- stringtie
- structure
- supernova
- tadbit
- tlex
- transdecoder
- trim_galore
- trinity
- tulip
- twisst
- vcflib
- vsearch
- vt
- yaha
