Difference between revisions of "Euler applications"
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Revision as of 08:21, 9 August 2016
The currently available modules on Euler are presented in the following table, with the following typographic convention:
- Bold version numbers are the current default
- Italic supported version numbers will be moved to legacy
- Italic new versions will be moved to supported
- Crossed-out versions will be removed
- Underlined versions will be the new defaults
| Application | Category | Module name | Legacy versions | Supported versions | New versions | Notes |
|---|---|---|---|---|---|---|
| Abaqus | FEA | abaqus | 6.11 | 6.13-26.14-1 | ||
| Abinit | Chemistry | abinit | 7.10.5 | |||
| ADF | Chemistry | adf | 2012.012013.01 | 2014.07 | ||
| ALPS | Physics | alps | 2.2b4-r7651 | |||
| AMDIS | Chemistry | amdis | 3197 | 3247 | ||
| ANSYS | Simulation | ansys | 14.515.0 | 16.217.0 | ||
| Apache Ant | Development | ant | 1.9.4 | |||
| ants | Image Processing | ants | 2.1.0 | |||
| autoconf | Development | autoconf | 2.69 | |||
| bazel | bazel | 0.2.30.3.0 | ||||
| GNU Binutils | Development | binutils | 2.25 | Needed to build AVX2 executables. | ||
| Biocondutor R | Bioinformatics | bioconductor | 3.0 | |||
| NCBI BLAST++ | Bioinformatics | blast | 2.2.30 | |||
| Boost | Library | boost | 1.55.01.59.0_pyucs4 | 1.57.01.59.0 | 1.59.0_py2.7.9 | |
| Bowtie | Bioinformatics | bowtie | 1.1.1 | |||
| Bowtie2 | Bioinformatics | bowtie2 | 2.2.3 | |||
| bzip2 | Compression | bzip2 | 1.0.6 | |||
| Cantera | Chemistry | cantera | 2.1.2 | |||
| canu | Bioinformatics | canu | 1.2 | |||
| Climate Data Operators (CDO) | Climate | cdo | 1.6.4 | |||
| ANSYS CFX | CFD | cfx | 14.515.0 | 16.217.0 | ||
| CHARMM | Chemistry | charmm | c39b1 | Only for licenced users. | ||
| climate | climate | 1.01.0~ | ||||
| CMake | Development | cmake | 2.8.12 | 3.3.13.5.2 | ||
| COMSOL Multiphysics | Physics | comsol | 4.45.05.1 | 5.2 | 5.2.0.2005.2a | |
| CP2K | Chemistry | cp2k | 2.5.140753.0 | 2.4.133773.0_libxc3.0_noelpatrunk.2.5.13191 | ||
| CuffLinks | cufflinks | 2.2.1 | ||||
| curl | Library | curl | 7.49.1 | |||
| dalton | dalton | 2016.12016.1_64 | ||||
| DEAL-II | Library | dealii | 8.2.1 | 8.3.0 | ||
| DIRAC | Chemistry | dirac | 14 | |||
| Eigen | Library | eigen | 3.2.1 | |||
| ELPA | Library | elpa | 2015.11.001 | |||
| FALCON | Bioinformatics | falcon | 0.5.0 | |||
| FDTD Solutions | Physics | fdtd | 8.5.3 | 8.118.15 | ||
| fenics | fenics | 1.6.0 | ||||
| FFmpeg | Visualization | ffmpeg | 1.0.1 | 2.3.3 | ||
| FFTW | Library | fftw | 2.1.52.1.5_both2.1.5_sp2.1.5_sp_both | 3.3.3 | 3.3.4 | |
| fftw_sp | Library | fftw_sp | 3.3.3 | 3.3.4 | ||
| fix | fix | 1.06 | ||||
| ANSYS FLUENT | CFD | fluent | 14.515.0 | 16.217.0 | ||
| OpenFOAM Extend | Fluid Dynamics | foam_ext | 3.1 | |||
| FreeFem++ | Library | freefem | 3.34 | |||
| FSL | Library | fsl | 5.0.7 | |||
| GAMESS US | Chemistry | gamess | 2013_BLW2014_R12014_R1_ser2014_XMVB | |||
| GAMS | Chemistry | gams | 24.5 | |||
| Gaussian | Chemistry | gaussian | 09d1 | Access upon request. | ||
| GNU GCC | Development | gcc | 4.7.4 | 4.4.74.8.24.9.2 | 4.8.45.2.0 | |
| git | Development | git | 1.9.0 | |||
| glpk | glpk | 4.60 | ||||
| GMP | Library | gmp | 5.1.3 | 6.0.0a6.1.0_cxx | ||
| Gmsh | FEM | gmsh | 2.12 | |||
| gnu_parallel | gnu_parallel | 20140622 | ||||
| Graphviz | Visualization | graphviz | 2.38 | |||
| Gromacs | Chemistry | gromacs | 4.6.7 | 5.0.2 | ||
| GSL | Library | gsl | 1.141.16 | |||
| Gurobi | Mathematics | gurobi | 6.0.26.5.1 | c6.0.2 | ||
| gUSE | Development | guse | 20150319 | |||
| HDF5 | Library | hdf5 | 1.8.12 | 1.8.13 | ||
| hwloc | System | hwloc | 1.11.0 | |||
| HYPRE | library | hypre | 2.10.0b | |||
| ANSYS ICEMCFD | CFD | icemcfd | 14.515.0 | 16.217.0 | ||
| Intel MPI Library | MPI | impi | 5.0.15.1.1 | |||
| imsbtools | Bioinformatics | imsbtools | 2015031920150319_swath | |||
| IMSL Numerical Libraries | Library | imsl | 7.1 | |||
| Intel Composer | Development | intel | 14.0.115.0.0 | 16.0.0 | ||
| Java | Development | java | 1.6.0_31 | 1.7.0_511.8.0_311.8.0_91 | ||
| Julia | Development | julia | 0.5.0_dev | |||
| Jython | Development | jython | 2.7.0 | |||
| LAMMPS | Chemistry | lammps | 2015-08-10 | 2015-05-152016-02-162016-02-16_python2016-05-14 | ||
| Libint | Library | libint | 1.1.5 | |||
| libxc | Chemistry | libxc | 2.2.33.0.0 | |||
| LIBXSMM | Library | libxsmm | 1.4.1 | |||
| LifeV | FEM | lifev | 3.8.8 | |||
| LLVM | Development | llvm | 3.6.0 | |||
| LSF DRMAA | Library | lsf_drmaa | 1.0.41.1.1 | |||
| Maple | Mathematics | maple | 17 | |||
| mapper | Bioinformatics | mapper | 1.0 | bfast | ||
| MSC Marc | FEA | marc | 2013.1 | 2015 | ||
| Mathematica | Mathematics | mathematica | 9.0.1 | 10.0.210.2.0 | ||
| MATLAB | Numerical | matlab | 8.28.5 | 8.48.6 | ||
| Apache Maven | Development | maven | 3.2.3 | |||
| maxwellrender | maxwellrender | 3.2 | ||||
| METIS | Library | metis | 5.1.05.1.0_325.1.0_64 | |||
| MKL | Library | mkl | 14.0.1 | |||
| molden | Visualization | molden | 5.6 | |||
| Molpro | Chemistry | molpro | 2010.1 | 2012.1_ser2015.1 | ||
| Mono .NET framework | Development | mono | 3.12.0 | |||
| MPFR | library | mpfr | 3.1.2 | 3.1.2_gmp6 | ||
| MrTrx3 | Library | mrtrix3 | 0.2.11 | vzvz2 | ||
| MUMPS | Library | mumps | 5.0.15.0.1_metis325.0.1_metis64 | |||
| MVAPICH2 | MPI | mvapich2 | 1.8.12.0b2.0rc12.0rc2 | 2.1 | 2.0.12.2a | |
| NAMD | Chemistry | namd | 2.10 | 2.10_test | ||
| NCO | Library | nco | 4.4.8 | |||
| Ncview | Visualization | ncview | 2.1.2 | |||
| netCDF | Library | netcdf | 4.3.1 | 4.3.2 | Include support for netCDF4/HDF5 parallel I/O. | |
| node.js | Development | node | 5.1.1 | |||
| ntl | Numerics | ntl | 9.8.1 | |||
| OpenBLAS | Library | openblas | 0.2.13_par0.2.13_seq0.2.8_par0.2.8_seq | |||
| OpenCV | Computer Vision | opencv | 3.1 | |||
| OpenFOAM | CFD | openfoam | 2.3.0 | 2.4.0 | ||
| OpenMesh | FEM | openmesh | 6.0 | |||
| Open MPI | MPI | open_mpi | 1.4.5 | 1.6.5 | 1.10.01.10.21.10.31.8.02.0.0 | |
| OpenMS | Chemistry | openms | 1.10.02.0.0-memory | |||
| ORCA | Chemistry | orca | 3.0.13.0.3 | |||
| OpenSHMEM over MPI-3 | Development | oshmpi | 2014-08-20 | |||
| PAPI | Development | papi | 5.4.1 | |||
| parallel_studio_xe | parallel_studio_xe | 20152016 | ||||
| ParaView | Visualization | paraview | 4.1.0 | |||
| ParMETIS | Library | parmetis | 4.0.34.0.3_324.0.3_64 | |||
| PCRE | Regular expression | pcre | 8.38 | |||
| Perl | Development | perl | 5.16.3 | |||
| PETSc | Library | petsc | 3.4.53.5.3_metis643.5.3_par3.6.33.6.3_metis323.6.3_metis64 | |||
| PGI Compiler | Development | pgi | 14.115.1 | |||
| phylo | Bioinformatics | phylo | 1.0 | BEAGLE, BEAST, muscle, PhyML | ||
| PLUMED | Chemistry | plumed | 2.1.0 | |||
| Parallel netCDF | Library | pnetcdf | 1.3.1 | |||
| psi4 | psi4 | 1.0rc | ||||
| pyFerret | Library | pyferret | 1.0.2 | |||
| PyMOL | Visualization | pymol | 1.7.4 | |||
| Python | Development | python | 2.7.63.3.3 | 2.7.6_UCS42.7.93.4.3 | ||
| Q-Chem | Chemistry | qchem | 4.3_SMP | |||
| Qt | Development | qt | 4.8.4 | 5.5.0 | ||
| Quantum Espresso | Chemistry | quantum_espresso | 4.0.3 | 5.15.3 | ||
| R Project | Numerical | r | 3.0.23.1.23.2.2 | 3.3.0 | ||
| RAxML | bioinformatics | raxml | 8.2.4 | |||
| RELION | Bioinformatics | relion | 1.3 | |||
| Revolution R Enterprise | Mathematics | rre | 7 | 7.37.4 | ||
| RStudio | Development | rstudio | 0.99.669 | |||
| SAMtools | Bioinformatics | samtools | 1.11.2 | |||
| ScaLAPACK | Library | scalapack | 2.0.2 | |||
| SPRNG | Numerics | sprng | 5.0 | |||
| ssh_wrapper | ssh_wrapper | blaunch | ||||
| STAR | Bioinformatics | star | 2.4.2a | |||
| Stata | Mathematics | stata | 1314 | |||
| Subread | Bioinformatics | subread | 1.5.0 | |||
| SuiteSparse | Library | suitesparse | 4.4.44.4.4_324.4.4_64 | |||
| SWIG | Development | swig | 3.0.5 | |||
| SZIP | Library | szip | 2.1 | |||
| TeX Live | Typesetting | texlive | 2009 | |||
| TopHat | Bioinformatics | tophat | 2.0.13 | |||
| tpp | Bioninformatics | tpp | 4.7.0 | |||
| TransAT | CFD | transat | 5.2.3 | |||
| Trilinos | Library | trilinos | 12.2.1 | |||
| Turbomole | Chemistry | turbomole | 6.4.06.4.0_mpi6.4.0_smp | 7.0.27.0.2_smp | ||
| UDUNITS | Library | udunits | 2.2.18 | 2.1.24 | ||
| Valgrind | Profiling | valgrind | 3.11.0 | |||
| VASP | Chemistry | vasp | 5.35.3_Gamma5.3_O15.3_SOC5.3_VTST | Only for license holders. | ||
| vcp | Bioinformatics | vcp | 1.01.1 | check components: module help vcp | ||
| VisIt | Visualization | visit | 2.8.0 | 2.8.22.9.0 | ||
| VMD | Visualization | vmd | 1.9.2 | |||
| VTK | Visualization | vtk | 6.1.0 | |||
| wxWidgets | Development | wxwidgets | 3.0.2 | |||
| Xerces | Bioinformatics | xerces | 3.1.1 | |||
| Xmgrace | Visualization | xmgrace | 5.1.24 | |||
| Xpdf | Visualization | xpdf | 3.03 | |||
| xz | Compression | xz | 5.2.2 | |||
| zlib | Compression | zlib | 1.2.8 |
