Euler applications and libraries

Introduction

On Euler cluster, we plan to switch at some point to LMOD modules, which provide some additional features compared to environment modules that we are currently using on Euler. LMOD allows to define a hierarchy of modules containing 3 layers (Core, Compiler, MPI). Therefore we present the list of available applications and libraries in a different way that takes into account the 3 layers of the module hierarchy.

Module hierarchy

Core layer

The core layer contains all module files which are not depending on any compiler/MPI. This can for instance be compilers, utility modules (eth_proxy, StdEnv) or commercial codes that bring their own runtime libraries to be independent of the compilers available on the system.

• StdEnv
• adf/2016.107
• adf/2017.114
• adf/2019.302
• adf/2021.102
• adf/2022.103
• amira/2022.1
• ansys/18.2_research
• ansys/18.2_teaching
• ansys/18.2
• ansys/19.5_research
• ansys/19.5_teaching
• ansys/19.5
• ansys/21.2_research
• ansys/21.2_teaching
• ansys/21.2
• ansys_em/19.5_research
• ansys_em/19.5_swissloop
• ansys_em/19.5_teaching
• ansys_em/19.5
• ansys_em/20.2.4_research
• ansys_em/20.2.4_swissloop
• ansys_em/20.2.4_teaching
• ansys_em/20.2.4
• ansys_em/22.1_research
• ansys_em/22.1_swissloop
• ansys_em/22.1_teaching
• arc/1.0.1
• arc/2.0.0
• atac/1.1.0
• atac/1.2.0
• atac/2.0.0
• avizotogo/2022.1
• bamstats/1.25
• blender/2.79b
• blender/2.80
• blender/2.93
• blender/3.1.2
• bs/1.5.3
• cdt/1.00
• cellranger/3.1.0
• cellranger/4.0.0
• cellranger/5.0.1
• cellranger/6.0.0
• cellranger/6.1.1
• cellranger/6.1.2
• cellranger/7.0.0
• cellranger/7.1.0
• cfx/18.2_research
• cfx/18.2_teaching
• cfx/18.2
• cfx/19.5_research
• cfx/19.5_teaching
• cfx/19.5
• cfx/21.2_research
• cfx/21.2_teaching
• cfx/21.2
• climate/3.0
• climate/4.0
• code-server/3.9.3
• code-server/3.11.1
• code-server/3.12.0
• code-server/4.10.0
• comsol/5.3a
• comsol/5.4
• comsol/5.5
• comsol/5.6
• comsol/6.0
• comsol/6.1
• cst_studio_suite/2020
• cubit/2020.2
• cubit/2021.4
• cubit/2022.4
• dna/1.1.0
• eth_proxy
• fiji/2.1.0
• fluent/18.2_research
• fluent/18.2_teaching
• fluent/18.2
• fluent/19.5_research
• fluent/19.5_teaching
• fluent/19.5
• fluent/21.2_research
• fluent/21.2_teaching
• fluent/21.2
• freesurfer/6.0.0
• gama/1.8
• gams/28.2
• gautomatch/0.56
• gcc/4.8.2
• gcc/4.8.5
• gcc/5.4.0
• gcc/6.3.0
• gcc/7.3.0
• gcc/8.2.0
• gcc/9.3.0
• gctf/1.06
• gctf/1.18
• gurobi/9.0.2
• gurobi/9.1.1
• gurobi/9.5.1
• gurobi/10.0.1
• hyperworks/2021
• icemcfd/18.2_research
• icemcfd/18.2_teaching
• icemcfd/18.2
• icemcfd/19.5_research
• icemcfd/19.5_teaching
• icemcfd/19.5
• icemcfd/21.2_research
• icemcfd/21.2_teaching
• icemcfd/21.2
• idl/8.8
• imagej/1.53
• intel/18.0.1
• intel/19.1.0
• intel/2018.1
• intel/2020.0
• intel/2022.1.2
• intel_tools/18.0.1
• intel_tools/2018.1
• interconnect/ethernet
• interconnect/infiniband
• libtorch/1.11.0
• libtorch/1.13.0
• mallet/2.0.8
• maple/2016
• maple/2019.1
• marc/2020
• mathematica/11.1.1
• mathematica/13.0.1
• matlab/R2017b
• matlab/R2020a
• matlab/R2020b
• matlab/R2021a
• matlab/R2022a
• matlab/R2022b
• matlab/9.3
• nvhpc/22.11_byo_compiler
• nvhpc/22.11_nompi
• nvhpc/22.11
• nxnastran/11
• orca/4.2.1
• orca/5.0.0
• orca/5.0.1
• orca/5.0.2
• orca/5.0.3
• orca/5.0.4
• paraview/5.6.0
• paraview/5.8.0_headless
• paraview/5.8.0
• paraview/5.9.1_headless
• paraview/5.9.1
• pgi/15.1
• qchem/4.3_SMP
• sambamba/0.8.1
• spaceranger/1.2.1
• spaceranger/1.3.1
• spaceranger/2.0.0
• stata/14
• stata/16
• trf/4.09.1
• turbomole/7.0.2_smp
• turbomole/7.0.2
• turbomole/7.4.1_smp
• turbomole/7.4.1
• virify/0.4.0
• vmd/1.9.3

Compiler layer

The compiler layer contains all modules which are depending on a particular compilers, but not on any MPI library. The standard compiler for the new software stack on Euler is GCC 4.8.5, therefore most applications and libraries are available for this compiler. We provide a second toolchain for GCC 6.3.0, which allows to compile applications that require the c++14 standard and a third toolchain for Intel 18.0.1.

GCC 4.8.5

• alsa-lib/1.1.4.1
• angsd/0.925
• ann/1.1.2
• ant/1.9.9
• apr-util/1.5.4
• apr/1.5.2
• arb/2.17.0
• arpack/96
• at-spi2-atk/2.26.2
• at-spi2-core/2.26.2
• atk/2.14.0
• atk/2.20.0
• atk/2.22.0
• atk/2.26.1
• atk/2.28.1
• atlas/3.11.34
• atop/2.2-3
• augustus/3.4.0
• autoconf/2.69
• automake/1.15
• bam-readcount/0.8.0
• bamtools/2.5.1
• bamutil/1.0.13
• bash-completion/2.7
• bash/4.4
• bazel/0.9.0
• bazel/0.19.2
• bazel/0.24.1
• bbmap/37.36
• bcl2fastq2/2.20.422
• bdw-gc/7.4.4
• beast2/2.5.2
• bedtools2/2.26.0
• bedtools2/2.27.1
• berkeley-db/5.3.28
• berkeley-db/6.2.32
• binutils/2.28
• bismark/0.19.0
• bismark/0.23.0
• bison/3.0.4
• bitmap/1.0.8
• blat/35
• blat/36
• blaze/3.1
• boost/1.62.0
• boost/1.63.0
• boost/1.64.0
• boost/1.69.0
• bowtie/1.2
• bowtie2/2.3.1
• bowtie2/2.3.4.1
• bowtie2/2.4.4
• bwa/0.7.12
• bwa/0.7.15
• bwa/0.7.17
• bzip2/1.0.6
• cairo/1.14.8
• cairo/1.14.10
• cairo/1.14.12
• cfitsio/3.450
• cgal/4.7
• cmake/2.8.10.2
• cmake/3.4.3
• cmake/3.8.0
• cmake/3.9.0
• cmake/3.9.4
• cmake/3.12.4
• cmake/3.14.4
• cmake/3.16.5
• cmake/3.20.3
• colm/0.12.0
• compositeproto/0.4.2
• coreutils/8.26
• cscope/15.8b
• ctffind/4.1.8
• cub/1.7.1
• cuda/8.0.61
• cuda/9.0.176
• cuda/9.2.88
• cuda/10.0.130
• cuda/10.1.243
• cuda/11.0.3
• cuda/11.1.1
• cudnn/5.1
• cudnn/6.0
• cudnn/7.0
• cudnn/7.2
• cudnn/7.3
• cudnn/7.4
• cudnn/7.5
• cudnn/7.6.4
• cudnn/8.0.5
• cudnn/8.1.1
• curl/7.53.1
• curl/7.61.1
• cutadapt/3.4
• damageproto/1.2.1
• dante/1.4.2
• dbus/1.11.2
• dbus/1.12.10
• diamond/2.0.6
• direnv/2.11.3
• dmlc-core/20170508
• dos2unix/7.3.4
• double-conversion/2.0.1
• doxygen/1.8.12
• dri2proto/2.8
• dri3proto/1.0
• dynamo/1.1.509
• eigen/3.3.3
• emacs/26.3
• eman2/2.3
• evieext/1.1.1
• expat/2.2.0
• exuberant-ctags/5.8
• fastq-screen/0.11.2
• fastq-screen/0.14.1
• fastqc/0.11.4
• fastqc/0.11.5
• fastqc/0.11.9
• ffmpeg/3.2.4
• ffmpeg/3.2.14
• fftw/3.3.5
• findutils/4.6.0
• fixesproto/5.0
• flac/1.3.2
• flash/1.2.11
• flex/2.6.1
• flex/2.6.3
• flint/2.5.2
• fltk/1.3.3
• fluidsynth/1.1.10
• font-util/1.3.1
• fontcacheproto/0.1.3
• fontconfig/2.11.1
• fontsproto/2.1.3
• fonttosfnt/1.0.4
• freebayes/1.2.0
• freeimage/3.18.0
• freetype/2.7
• ftgl/2.1.3
• gatk/3.8-0
• gatk/4.1.4.1
• gautomatch/0.56
• gawk/4.1.4
• gctf/1.06
• gctf/1.18_b2
• gdal/2.2.2
• gdal/2.3.2
• gdal/2.4.4
• gdal/3.1.2
• gdbm/1.13
• gdk-pixbuf/2.31.2
• gdk-pixbuf/2.31.4
• gdk-pixbuf/2.31.6
• geos/3.7.1
• gettext/0.19.8.1
• gflags/2.1.2
• ghostscript-fonts/8.11
• ghostscript/9.21
• giflib/5.1.4
• git-lfs/2.3.0
• git/2.12.1
• git/2.29.0
• glew/2.0.0
• glfw/3.3
• glib/2.49.7
• glib/2.50.3
• glib/2.53.1
• glib/2.56.1
• glm/0.9.7.1
• glog/0.3.4
• glpk/4.55
• glpk/4.61
• glproto/1.4.17
• gmake/4.0
• gmp/6.1.2
• gnat/2016
• gnuplot/5.0.5
• gnutls/3.5.10
• go-bootstrap/1.4-bootstrap-20161024
• go/1.8.1
• go/1.11.1
• gobject-introspection/1.49.1
• gobject-introspection/1.49.2
• gobject-introspection/1.50.0
• gperf/3.0.4
• gperftools/2.4
• gpu-burn/1.0
• graphtyper/1.3
• graphviz/2.40.1
• groff/1.22.3
• gsl/1.16
• gsl/2.3
• gtkplus/2.24.31
• gtkplus/2.24.32
• gtkplus/3.20.10
• gts/121130
• guile/2.0.11
• gurobi/8.1.1
• harfbuzz/1.4.6
• harfbuzz/1.4.7
• harfbuzz/1.4.8
• hdf/4.2.12
• hdf5/1.10.1
• help2man/1.47.4
• hisat2/2.1.0
• htop/2.0.2
• htslib/1.6
• htslib/1.7
• hwloc/1.11.6
• hwloc/1.11.10
• hwloc/1.11.12
• icu4c/58.2
• id3lib/3.8.3
• idba/1.1.3
• igv/2.8.2
• ilmbase/2.3.0
• image-magick/7.0.2-7
• imake/1.0.7
• inputproto/2.3.2
• intltool/0.51.0
• isl/0.18
• jags/4.3.0
• jansson/2.9
• jasper/1.900.1
• jdk/7u51
• jdk/8u92
• jdk/8u141-b15
• jdk/8u172-b11
• jemalloc/4.5.0
• jpeg/9b
• jq/1.5
• json-c/0.13.1
• jsoncpp/1.7.3
• kbproto/1.0.7
• krb5/1.16.1
• lcms/2.8
• leveldb/1.20
• lftp/4.8.1
• libaio/0.3.110
• libarchive/3.2.1
• libassuan/2.4.5
• libatomic-ops/7.4.4
• libcerf/1.3
• libctl/3.2.2
• libdrm/2.4.70
• libdwarf/20160507
• libedit/3.1-20170329
• libelf/0.8.13
• libepoxy/1.4.3
• libevent/2.0.19
• libfabric/1.8.0
• libffi/3.2.1
• libfontenc/1.1.3
• libfs/1.0.7
• libgcrypt/1.6.2
• libgd/2.2.4
• libgeotiff/1.4.3
• libgeotiff/1.5.1
• libgme/0.6.2
• libgpg-error/1.21
• libgpuarray/0.6.2_py2
• libgpuarray/0.6.2_py3
• libice/1.0.9
• libiconv/1.15
• libjpeg-turbo/1.5.0
• libmatheval/1.1.11
• libmng/2.0.2
• libnl/3.3.0
• libogg/1.3.2
• libopenal/1.17.2
• libpcap/1.8.1
• libpciaccess/0.13.4
• libpipeline/1.4.2
• libpng/1.6.27
• libpthread-stubs/0.3
• libpthread-stubs/0.4
• librdf/1.0.17
• libsigsegv/2.11
• libsm/1.2.2
• libsndfile/1.0.26
• libsndfile/1.0.28
• libsndfile/1.0.31
• libsodium/1.0.13
• libspatialindex/1.8.5
• libssh2/1.8.0
• libtiff/3.9.7
• libtiff/4.0.6
• libtiff/4.0.10
• libtool/2.4.6
• libunistring/0.9.7
• libunwind/1.1
• libusb/1.0.22
• libvorbis/1.3.5
• libx11/1.6.3
• libxau/1.0.8
• libxaw/1.0.13
• libxc/3.0.0
• libxcb/1.12
• libxcomposite/0.4.4
• libxcursor/1.1.14
• libxdamage/1.1.4
• libxdmcp/1.1.2
• libxevie/1.0.3
• libxext/1.3.3
• libxfixes/5.0.2
• libxfont/1.5.2
• libxfontcache/1.0.5
• libxft/2.3.2
• libxi/1.7.6
• libxinerama/1.1.3
• libxkbcommon/0.8.2
• libxkbfile/1.0.9
• libxkbui/1.0.2
• libxml2/2.9.4
• libxmu/1.1.2
• libxp/1.0.3
• libxpm/3.5.10
• libxrandr/1.5.0
• libxrender/0.9.10
• libxres/1.0.7
• libxscrnsaver/1.2.2
• libxshmfence/1.2
• libxslt/1.1.29
• libxt/1.1.5
• libxtst/1.2.2
• libxv/1.0.10
• libxvmc/1.0.9
• libxxf86misc/1.0.3
• libxxf86vm/1.1.4
• libzmq/4.3.2
• llvm/3.8.1
• lmdb/0.9.16
• lmod/7.4.11
• lsf_drmaa/1.1.1
• lua-jit/2.0.4
• lua-luafilesystem/1_6_3
• lua-luaposix/33.4.0
• lua/5.3.2
• lumpy-sv/0.3.0
• lz4/1.7.5
• lzip/1.19
• lziprecover/1.19
• lzlib/1.9
• lzma/4.32.7
• lzo/2.09
• m4/1.4.18
• magma/2.2.0
• magma/2.5.1
• man-db/2.7.6.1
• matio/1.5.9
• maven/3.3.9
• mawk/1.3.4
• mc/4.8.23
• mesa-glu/9.0.0
• mesa/12.0.3
• mesa/12.0.6
• meson/0.42.0
• metis/5.1.0
• miniasm/0.3
• minimap2/2.16
• mkfontdir/1.0.7
• mkfontscale/1.1.2
• motif/2.3.8
• motioncor2/1.1.0
• motioncor2/1.2.3
• motioncor2/1.3.0
• motioncorr/2.1
• mpc/1.0.3
• mpfr/3.1.5
• mpfr/4.0.1
• msgpack-c/3.0.1
• mshadow/20170721
• multiqc/1.8
• multiqc/1.11
• nano/2.6.3
• nasm/2.11.06
• nccl/2.3.7-1
• nccl/2.4.8-1
• ncurses/6.0
• netcdf-cxx/4.2
• netcdf/4.4.1
• nettle/3.2
• ngs-bits/2020_03
• ninja/1.8.2
• nlopt/2.5.0
• nnvm/20170418
• numactl/2.0.12
• ocaml/4.03.0
• oce/0.18
• oniguruma/6.1.3
• openblas/0.2.19
• opencv/3.3.0
• opencv/3.4.1
• opencv/3.4.3
• opencv/3.4.6
• openexr/2.3.0
• openjdk/11.0.2
• openjdk/14.0.2
• openjpeg/2.1
• openmpi/2.1.0
• openmpi/2.1.1
• openmpi/4.0.1
• openms/2.1.0
• openssl/1.0.1e
• optitype/1.3.1
• opus/1.1.4
• p7zip/16.02
• pango/1.40.3
• pango/1.40.4
• patch/2.7.5
• patchelf/0.9
• pbzip2/1.1.13
• pcre/8.40
• pcre2/10.31
• perl-capture-tiny/0.46
• perl-data-dumper/2.173
• perl-dbi/1.636
• perl-extutils-makemaker/7.24
• perl-extutils-pkgconfig/1.16
• perl-gd/2.53
• perl-gdgraph/1.4308
• perl-gdtextutil/0.86
• perl-json/2.97001
• perl-module-build/0.4224
• perl-sub-uplevel/0.2800
• perl-term-readkey/2.37
• perl-test-exception/0.43
• perl-uri-escape/1.71
• perl-xml-parser/2.44
• perl/5.18.4
• perl/5.24.1
• perl/5.30.1
• picard/2.9.2
• picard/2.18.17
• picard/2.25.4
• pigz/2.4
• pixman/0.34.0
• pkg-config/0.29.2
• plzip/1.6
• poppler-data/0.4.9
• poppler/0.65.0
• poppler/0.68.0
• portaudio/190600_20161030
• postgresql/9.5.3
• postgresql/10.3
• postgresql/11.0
• postgresql/11.4
• postgresql/12.5
• postgresql/13.1
• postgresql/13.2
• presentproto/1.0
• printproto/1.0.5
• proj/4.9.2
• proj/5.2.0
• proj/6.3.1
• protobuf/3.1.0
• protobuf/3.2.0
• protobuf/3.3.0
• ps-lite/20170328
• py-mappy/2.2
• python_cpu/2.7.12
• python_cpu/2.7.13
• python_cpu/2.7.14
• python_cpu/3.6.0
• python_cpu/3.6.1
• python_cpu/3.6.4
• python_cpu/3.7.1
• python_cpu/3.7.4
• python_gpu/2.7.12
• python_gpu/2.7.13
• python_gpu/2.7.14
• python_gpu/3.6.0
• python_gpu/3.6.1
• python_gpu/3.6.4
• python_gpu/3.7.1
• python_gpu/3.7.4
• qhull/2015.2
• qt/4.8.6
• qt/5.5.0
• qt/5.5.1
• qt/5.9.1
• r/3.3.3
• r/3.4.3
• r/3.5.1
• r/3.6.1
• r/4.0.2
• r/4.1.0
• ragel/6.10
• randrproto/1.5.0
• raptor/2.0.15
• rasqal/0.9.33
• rdkit/2020_03_6
• rdma-core/20
• readline/7.0
• recordproto/1.14.2
• renderproto/0.11.1
• renku/0.9.2_dev25
• renku/0.12.0
• resourceproto/1.2.0
• rna-seqc/1.1.8
• robinhood/3.1.5
• rstudio/1.1.456
• ruby/2.2.0
• samtools/1.2
• samtools/1.6
• scala/2.12.1
• scons/2.5.0
• scotch/6.0.4
• scrnsaverproto/1.2.2
• sdl2/2.0.5
• sed/4.2.2
• seqtk/1.3
• serf/1.3.8
• sett/1.1.1
• sett/1.1.2
• sett/1.2.0
• sett/2.0.0
• sett/2.0.1
• sett/2.3.0
• sett/2.5.0
• sett/2.6.0
• sett/2.7.0
• sett/3.0.0
• setxkbmap/1.3.1
• shared-mime-info/1.9
• shared-mime-info/1.10
• silo/4.10.2
• snappy/1.1.3
• snpeff/4.3t
• somatic-sniper/1.0.5.0
• sowing/1.1.23-p1
• sox/14.4.2
• sparsehash/2.0.3
• sqlite/3.18.0
• sra-toolkit/2.8.1
• sra-toolkit/2.8.2-1
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GCC 6.3.0

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