Igenomes
From ScientificComputing
On the Euler cluster, we provide a collection of reference data for bioinformatics software. Here we would like to give an overview on available igenome packages (these are available at /cluster/project/igenomes), provided by http://support.illumina.com/sequencing/sequencing_software/igenome.html.
| Species | Provider | Build |
|---|---|---|
| Arabidopsis thaliana | Ensembl | TAIR10 |
| NCBI | TAIR10 | |
| Bacillus cereus ATCC 10987 | NCBI | 2004-02-13 |
| Bacillus subtilis 168 | Ensembl | EB2 |
| Caenorhabditis elegans | Ensembl | WBcel235 |
| NCBI | WS195 | |
| UCSC | ce10 | |
| Drosophila melanogaster | Ensembl | BDGP5.25 |
| BDGP6 | ||
| NCBI | build5.41 | |
| UCSC | dm6 | |
| Enterobacteriophage lambda | NCBI | 1993-04-28 |
| Escherichia coli K 12 DH10B | Ensembl | EB1 |
| NCBI | 2008-03-17 | |
| Escherichia coli K 12 MG1655 | NCBI | 2001-10-15 |
| Glycine max | Ensembl | Gm01 |
| Homo sapiens | Ensembl | GRCh37 |
| NCBI | GRCh38 | |
| UCSC | hg19 | |
| hg38 | ||
| Mus musculus | Ensembl | NCBIM37 |
| NCBI | GRCm38 | |
| UCSC | mm10 | |
| Mycobacterium tuberculosis H37RV | Ensembl | H37Rv.EB1 |
| NCBI | 2001-09-07 | |
| Oryza sativa japonica | Ensembl | IRGSP-1.0 |
| PhiX | Illumina | RTA |
| NCBI | 1993-04-28 | |
| Pseudomonas aeruginosa PAO1 | NCBI | 2000-09-13 |
| Rattus norvegicus | Ensembl | Rnor_6.0 |
| NCBI | Rnor_6.0 | |
| UCSC | rn6 | |
| Rhodobacter sphaeroides 2.4.1 | NCBI | 2005-10-07 |
| Saccharomyces cerevisiae | Ensembl | R64-1-1 |
| NCBI | build3.1 | |
| UCSC | sacCer3 | |
| Schizosaccharomyces pombe | Ensembl | EF2 |
| Sorangium cellulosum So ce 56 | NCBI | 2007-11-27 |
| Sorghum bicolor | Ensembl | Sbi1 |
| Staphylococcus aureus NCTC 8325 | NCBI | 2006-02-13 |
