Difference between revisions of "LSF to Slurm quick reference"
From ScientificComputing
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! LSF !! Slurm | ! LSF !! Slurm | ||
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| − | | style="width:50%;" | <tt>bjobs [JOBID]</tt> || <tt>squeue [JOBID]</tt> | + | | style="width:50%;" | <tt>bjobs [JOBID]</tt> || <tt>squeue -j [JOBID]</tt> |
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Revision as of 09:52, 31 March 2022
Contents
Introduction
The commands for slurm are similar to the ones used in LSF. You can find a mapping of the relevant commands below.
Submitting a job
| LSF | Slurm |
|---|---|
| bsub < jobscript.sh | sbatch jobscript.sh |
jobscript.sh:#!/bin/bash #BSUB -n 4 #BSUB -W 08:00 #BSUB -R "rusage[mem=2000]" #BSUB -J analysis1 #BSUB -o analysis1.out #BSUB -e analysis1.err # load modules # run command |
jobscript.sh:#!/bin/bash #SBATCH -n 4 #SBATCH --time=8:00 #SBATCH --mem-per-cpu=2G #SBATCH --job-name=analysis1 #SBATCH --output=analysis1.out #SBATCH --error=analysis1.err # load modules # run command |
Interactive job
| LSF | Slurm |
|---|---|
| bsub -Is [LSF options] bash | srun --pty bash |
Monitoring a job
| LSF | Slurm |
|---|---|
| bjobs [JOBID] | squeue -j [JOBID] |
Killing a job
| LSF | Slurm |
|---|---|
| bkill [JOBID] | scancel [JOBID] |
Environment variables
| LSF | Slurm |
|---|---|
| $LSB_JOBID | $SLURM_JOBID |
| $LSB_SUBCWD | $SLURM_SUBMIT_DIR |
