Difference between revisions of "LSF to Slurm quick reference"
From ScientificComputing
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#SBATCH -n 4 | #SBATCH -n 4 | ||
#SBATCH --time=8:00 | #SBATCH --time=8:00 | ||
| − | #SBATCH --mem-per-cpu= | + | #SBATCH --mem-per-cpu=2000 |
#SBATCH --job-name=analysis1 | #SBATCH --job-name=analysis1 | ||
#SBATCH --output=analysis1.out | #SBATCH --output=analysis1.out | ||
Revision as of 08:55, 31 March 2022
Contents
Introduction
The commands for slurm are similar to the ones used in LSF. You can find a mapping of the relevant commands below.
Submitting a job
| LSF | Slurm |
|---|---|
| bsub < jobscript.sh | sbatch jobscript.sh |
jobscript.sh:#!/bin/bash #BSUB -n 4 #BSUB -W 08:00 #BSUB -R "rusage[mem=2000]" #BSUB -J analysis1 #BSUB -o analysis1.out #BSUB -e analysis1.err # load modules # run command |
jobscript.sh:#!/bin/bash #SBATCH -n 4 #SBATCH --time=8:00 #SBATCH --mem-per-cpu=2000 #SBATCH --job-name=analysis1 #SBATCH --output=analysis1.out #SBATCH --error=analysis1.err # load modules # run command |
Interactive job
| LSF | Slurm |
|---|---|
| bsub -Is [LSF options] bash | srun --pty bash |
Monitoring a job
| LSF | Slurm |
|---|---|
| bjobs [JOBID] | squeue [-j JOBID] |
Killing a job
| LSF | Slurm |
|---|---|
| bkill [JOBID] | scancel [JOBID] |
Environment variables
| LSF | Slurm |
|---|---|
| $LSB_JOBID | $SLURM_JOB_ID |
| $LSB_SUBCWD | $SLURM_SUBMIT_DIR |
