Difference between revisions of "Leonhard applications and libraries"

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On Leonhard cluster, we use [https://lmod.readthedocs.io/en/latest/index.html LMOD modules], which provide some additional features compared to [http://modules.sourceforge.net environment modules] that we use on Euler. LMOD allows to define a hierarchy of modules containing 3 layers (Core, Compiler, MPI). Therefore we present the list of available applications and libraries in a different way that takes into account the 3 layers of the module hierarchy.
 
On Leonhard cluster, we use [https://lmod.readthedocs.io/en/latest/index.html LMOD modules], which provide some additional features compared to [http://modules.sourceforge.net environment modules] that we use on Euler. LMOD allows to define a hierarchy of modules containing 3 layers (Core, Compiler, MPI). Therefore we present the list of available applications and libraries in a different way that takes into account the 3 layers of the module hierarchy.
  
==Python on Leonhard==
+
==Python (TensorFlow) on Leonhard==
Because certain Python packages need different installations for their CPU and GPU versions, we decided to have separate Python installations with regards to using CPUs and GPUs. Please have a look at our [[Python_on_Leonhard|wiki page]] regarding Python on Leonhard.
+
Because certain Python packages need different installations for their CPU and GPU versions, we decided to have separate Python installations with regards to using CPUs and GPUs. Please have a look at our [[Python_on_Leonhard|wiki page]] regarding Python on Leonhard. It contains a listing of the available TensorFlow versions.
  
 
==Module hierarchy==
 
==Module hierarchy==

Latest revision as of 05:55, 11 October 2019

Introduction

On Leonhard cluster, we use LMOD modules, which provide some additional features compared to environment modules that we use on Euler. LMOD allows to define a hierarchy of modules containing 3 layers (Core, Compiler, MPI). Therefore we present the list of available applications and libraries in a different way that takes into account the 3 layers of the module hierarchy.

Python (TensorFlow) on Leonhard

Because certain Python packages need different installations for their CPU and GPU versions, we decided to have separate Python installations with regards to using CPUs and GPUs. Please have a look at our wiki page regarding Python on Leonhard. It contains a listing of the available TensorFlow versions.

Module hierarchy

Core layer

The core layer contains all module files which are not depending on any compiler/MPI. This can for instance be compilers, utility modules (eth_proxy, StdEnv) or commercial codes that bring their own runtime libraries to be independent of the compilers available on the system.

  • StdEnv
  • agi_photoscan/1.3.4
  • ansys/18.2
  • blender/2.79b
  • blender/2.80
  • cfx/18.2
  • compat/gpfs
  • compat/ib_gpfs
  • comsol/5.3a
  • comsol/5.4
  • eth_proxy
  • fluent/18.2
  • gcc/4.8.2
  • gcc/4.8.5
  • gcc/5.4.0
  • gcc/6.3.0
  • gcc/7.1.0
  • gcc/8.2.0
  • getliquidfiles/0.1
  • getliquidfiles/0.5
  • hyperworks/2018.0.1
  • icemcfd/18.2
  • intel/18.0.1
  • intel/2018.1
  • intel_tools/18.0.1
  • intel_tools/2018.1
  • lmod/7.4.11
  • matlab/R2017b
  • matlab/9.3
  • mongodb/4.0.3
  • paraview/5.6.2
  • settarg/7.4.11
  • stata/14
  • stata/16

Compiler layer

The compiler layer contains all modules which are depending on a particular compilers, but not on any MPI library. The standard compiler on Leonhard is GCC 4.8.5, therefore most applications and libraries are available for this compiler. We provide a second toolchain for GCC 6.3.0, which allows to compile applications that require the c++14 standard and a third toolchain for Intel 18.0.1. For compatibility reasons, we also provide a few applications and libraries for the deprecated GCC 4.8.2 toolchain.

GCC 4.8.2

  • adapterremoval/2.1.7
  • admixtools/4.1
  • angsd/0.912
  • angsd/0.917
  • angsd/0.919
  • augustus/3.2.1
  • bamtools/2.4.0
  • bayescan/2.1
  • bbmap/35.85
  • bcl2fastq/2.19.1
  • beagle/3.3.2
  • beagle/4.1
  • beast2/2.4.6
  • bedtools/2.25
  • bedtools/2.27.1
  • bfc/1.0
  • bioconductor/3.1
  • bioconductor/3.4
  • biojava/4.1.0
  • bismark/0.19.0
  • blasr/5.3
  • blasr_bam/5.3
  • blast/2.3.0
  • blat/35
  • blobtools/0.9.19.5
  • boost/1.55.0
  • boost/1.63.0
  • bowtie/1.1.2
  • bowtie2/2.2.6
  • bowtie2/2.3.0
  • bowtie2/2.3.2
  • breseq/0.27.1
  • breseq/0.29.0
  • breseq/0.30.1
  • breseq/0.32.0
  • busco/1.1b1
  • busco/2.0
  • busco/3.0.2
  • bwa/0.7.12
  • bwa/0.7.17
  • bzip2/1.0.6
  • canu/1.6
  • cd-hit/4.6.4
  • cd-hit/4.6.5
  • cd-hit/4.6.6
  • circos/0.69-6
  • circos/0.96-6
  • clustalw/2.1
  • cmake/3.9.0
  • crisp/05032017
  • curl/7.51
  • diamond/0.9.3
  • diamond/0.9.22
  • docent/2.12
  • emboss/6.5.7
  • epiteome/1.0
  • examl/3.0.17
  • exonerate/2.4.0
  • falcon/1.8.8
  • falcon_phase/0.1.0_beta
  • fasta/36.3.8e
  • fastqc/0.11.4
  • fastqscreen/0.9.3
  • faststructure/20160120
  • fastx_toolkit/0.0.14
  • flash/1.2.11
  • freebayes/0.9.20
  • freebayes/1.0.2
  • freebayes/1.1.0-3-g961e5f3
  • gatk/3.5
  • gatk/4.0
  • gaussian/09d1
  • gdc
  • gemma/0.94
  • genemark_es/4
  • genomemapper/0.4.4
  • genometools/1.5.9
  • genotan/0.1.5
  • gmap/20160923
  • graphmap/0.3.0
  • gsl/1.16
  • halc/1.1
  • hdf5/1.8.12
  • hisat2/2.1.0
  • hmmer/3.1
  • idba/1.1.1
  • imr/0.4.1
  • instruct/3.2.09
  • java/1.8.0_73
  • java/1.8.0_101
  • jitterbug/09032016
  • kaiju/1.6.2
  • kallisto/0.43.0
  • kat/2.3.1
  • kraken/0.10.5
  • lastz/1.02
  • ldhat/2.2a
  • ldhelmet/1.9
  • ldhot/0.4
  • lfmm/1.4
  • lofreq/2.1.2
  • lordec/0.6
  • lorte/1.2
  • ltrfinder/1.0.7
  • macse/1.01b
  • mafft/7.273
  • maker/2.31.9
  • masurca/3.2.2
  • masurca/3.2.3
  • megahit/1.1.3
  • meme/4.12.0
  • metabat/2.12.1
  • metaphlan/2.0
  • metavelvet/1.2.02
  • methyldackel/0.3.0
  • migrate/3.6.11
  • miniasm/0.2
  • minimap2/2.2
  • mocat/2.0
  • motus/1.1.1
  • mrbayes/3.2.6
  • msmc2/2.1.0
  • mummer/4.0.0b1
  • muscle/3.8.1551
  • nanocall/0.5.13
  • ngsep/3.0.2
  • ngsrelate/0.1
  • ngstools/1.0.1
  • open_mpi/1.6.5
  • openblas/0.2.13_seq
  • pasapipeline/2.0.2
  • pcangsd/0.8.0
  • pcre/8.38
  • perl/5.18.4
  • phyla_amphora/1.0
  • picard-tools/1.89
  • picard-tools/2.0.1
  • pindel/0.2.5b8
  • plink/1.07
  • plink/1.90
  • popoolation/1.2.2
  • popoolation2/1201
  • primer3/2.3.7
  • prinseq-lite/0.20.4
  • prodigal/2.6.3
  • prokka/1.11
  • proovread/2.14.1
  • python/2.7.11
  • python/3.4.3
  • python/3.6.1
  • qualimap/2.2.1
  • quast/4.5
  • quickmerge/0.2
  • racon/0.5.0
  • rad_haplotyper/1.1.5
  • rad_haplotyper/1.1.9
  • raxml-ng/0.1.0rc
  • raxml/8.2.4
  • reads2snp/2.0
  • redundans/0.13c
  • repeatmasker/4.0.6_pub
  • repeatmasker/4.0.6
  • repeatmasker/4.0.7
  • repeatmodeler/1.0.11
  • ribopicker/0.4.3
  • rmblast/2.2.28
  • rmblast/2.6.0
  • rtg-tools/3.8.4
  • salmon/0.9.1
  • salmonte/0.3
  • salsa/1.0
  • sambamba/0.6.1
  • sambamba/0.6.6
  • samblaster/0.1.22
  • samtools/1.3
  • samtools/1.7
  • samtools/1.8
  • se-mei/1.0
  • segemehl/0.2.0
  • seqkit/0.7.2
  • seqprep/1
  • seqtk/1.2-r94
  • sga/0.10.14
  • shore/0.9.3
  • smrt_analysis/2.3.0_p5
  • smrt_link/5.0.1.9585
  • snap/2006-07-28
  • snippy/4.0-dev2
  • snpeff/4.3m
  • snpgenie/1.0
  • soapdenovo2/2.04
  • sortmerna/2.1
  • spades/3.6.2
  • spades/3.10.0
  • spades/3.11.1
  • spaunge/1.0
  • sqlite3/3.11
  • sra-tools/2.7.0
  • sra-tools/2.8.1-3
  • stacks/1.37
  • stacks/1.40
  • stacks/2.0b
  • stampy/1.0.22
  • stringtie/1.3.3b
  • structure/2.3.4
  • suitesparse/4.5.1
  • swig/3.0.8
  • tadbit/0.2
  • tlex/2.2.1
  • tophat/1.4.1
  • tophat/2.1.1
  • transdecoder/3.0.1
  • trf/4.09
  • trim_galore/0.4.5
  • trimmomatic/0.35
  • trinity/2.1.1
  • trinity/2.4.0
  • trinity/2.5.1
  • tulip/0.4
  • twisst/1.0
  • usearch/8.1
  • vcflib/1.0.0
  • vcflib/1.0.1
  • vcftools/0.1.14
  • vcftools/0.1.15
  • velvet/1.2.10
  • vt/0.5
  • xz/5.2.2
  • yaha/0.1.83
  • zlib/1.2.8

GCC 4.8.5

  • alsa-lib/1.1.4.1
  • angsd/0.925
  • ann/1.1.2
  • ant/1.9.9
  • apr-util/1.5.4
  • apr/1.5.2
  • arpack/96
  • at-spi2-atk/2.26.2
  • at-spi2-core/2.26.2
  • atk/2.14.0
  • atk/2.20.0
  • atk/2.22.0
  • atk/2.26.1
  • atk/2.28.1
  • atlas/3.11.34
  • atop/2.2-3
  • autoconf/2.69
  • automake/1.15
  • bamtools/2.5.1
  • bash/4.4
  • bazel/0.9.0
  • bazel/0.19.2
  • bazel/0.24.1
  • bbmap/37.36
  • bdw-gc/7.4.4
  • beast2/2.5.2
  • bedtools2/2.27.1
  • berkeley-db/5.3.28
  • berkeley-db/6.2.32
  • binutils/2.28
  • bison/3.0.4
  • bitmap/1.0.8
  • blat/35
  • blaze/3.1
  • boost/1.62.0
  • boost/1.63.0
  • boost/1.64.0
  • boost/1.69.0
  • bowtie/1.2
  • bowtie2/2.3.1
  • bwa/0.7.12
  • bwa/0.7.17
  • bzip2/1.0.6
  • cairo/1.14.8
  • cairo/1.14.10
  • cairo/1.14.12
  • cgal/4.7
  • cmake/2.8.10.2
  • cmake/3.4.3
  • cmake/3.8.0
  • cmake/3.9.0
  • cmake/3.9.4
  • cmake/3.12.4
  • cmake/3.14.4
  • compositeproto/0.4.2
  • coreutils/8.26
  • cscope/15.8b
  • ctffind/4.1.8
  • cub/1.7.1
  • cuda/8.0.61
  • cuda/9.0.176
  • cuda/9.2.88
  • cuda/10.0.130
  • cuda/10.1.243
  • cudnn/5.1
  • cudnn/6.0
  • cudnn/7.0
  • cudnn/7.2
  • cudnn/7.3
  • cudnn/7.4
  • cudnn/7.5
  • cudnn/7.6.4
  • curl/7.53.1
  • curl/7.61.1
  • damageproto/1.2.1
  • dante/1.4.2
  • dbus/1.11.2
  • dbus/1.12.10
  • direnv/2.11.3
  • dmlc-core/20170508
  • dos2unix/7.3.4
  • doxygen/1.8.12
  • dri2proto/2.8
  • dri3proto/1.0
  • eigen/3.3.3
  • eman2/2.3
  • evieext/1.1.1
  • expat/2.2.0
  • exuberant-ctags/5.8
  • fastqc/0.11.4
  • ffmpeg/3.2.4
  • fftw/3.3.5
  • findutils/4.6.0
  • fixesproto/5.0
  • flac/1.3.2
  • flex/2.6.1
  • flex/2.6.3
  • fltk/1.3.3
  • fluidsynth/1.1.10
  • font-util/1.3.1
  • fontcacheproto/0.1.3
  • fontconfig/2.11.1
  • fontsproto/2.1.3
  • fonttosfnt/1.0.4
  • freetype/2.7
  • ftgl/2.1.3
  • gatk/3.8-0
  • gautomatch/0.56
  • gawk/4.1.4
  • gctf/1.06
  • gctf/1.18_b2
  • gdal/2.2.2
  • gdal/2.3.2
  • gdbm/1.13
  • gdk-pixbuf/2.31.2
  • gdk-pixbuf/2.31.4
  • gdk-pixbuf/2.31.6
  • geos/3.7.1
  • gettext/0.19.8.1
  • gflags/2.1.2
  • ghostscript-fonts/8.11
  • ghostscript/9.21
  • git-lfs/2.3.0
  • git/2.12.1
  • glew/2.0.0
  • glfw/3.3
  • glib/2.49.7
  • glib/2.50.3
  • glib/2.53.1
  • glib/2.56.1
  • glm/0.9.7.1
  • glog/0.3.4
  • glpk/4.61
  • glproto/1.4.17
  • gmake/4.0
  • gmp/6.1.2
  • gnat/2016
  • gnuplot/5.0.5
  • gnutls/3.5.10
  • go-bootstrap/1.4-bootstrap-20161024
  • go/1.8.1
  • go/1.11.1
  • gobject-introspection/1.49.1
  • gobject-introspection/1.49.2
  • gobject-introspection/1.50.0
  • gperf/3.0.4
  • gperftools/2.4
  • gpu-burn/1.0
  • graphtyper/1.3
  • graphviz/2.40.1
  • groff/1.22.3
  • gsl/1.16
  • gsl/2.3
  • gtkplus/2.24.31
  • gtkplus/2.24.32
  • gtkplus/3.20.10
  • gts/121130
  • guile/2.0.11
  • gurobi/8.1.1
  • harfbuzz/1.4.6
  • harfbuzz/1.4.7
  • harfbuzz/1.4.8
  • hdf/4.2.12
  • hdf5/1.10.1
  • help2man/1.47.4
  • htop/2.0.2
  • htslib/1.6
  • hwloc/1.11.6
  • hwloc/1.11.10
  • hwloc/1.11.12
  • icu4c/58.2
  • id3lib/3.8.3
  • ilmbase/2.3.0
  • image-magick/7.0.2-7
  • imake/1.0.7
  • inputproto/2.3.2
  • intltool/0.51.0
  • isl/0.18
  • jansson/2.9
  • jasper/1.900.1
  • jdk/7u51
  • jdk/8u92
  • jdk/8u141-b15
  • jdk/8u172-b11
  • jemalloc/4.5.0
  • jpeg/9b
  • jq/1.5
  • jsoncpp/1.7.3
  • kbproto/1.0.7
  • krb5/1.16.1
  • lcms/2.8
  • leveldb/1.20
  • lftp/4.8.1
  • libarchive/3.2.1
  • libassuan/2.4.5
  • libatomic-ops/7.4.4
  • libcerf/1.3
  • libctl/3.2.2
  • libdrm/2.4.70
  • libdwarf/20160507
  • libedit/3.1-20170329
  • libelf/0.8.13
  • libepoxy/1.4.3
  • libevent/2.0.19
  • libfabric/1.8.0
  • libffi/3.2.1
  • libfontenc/1.1.3
  • libfs/1.0.7
  • libgcrypt/1.6.2
  • libgd/2.2.4
  • libgme/0.6.2
  • libgpg-error/1.21
  • libgpuarray/0.6.2_py2
  • libgpuarray/0.6.2_py3
  • libice/1.0.9
  • libiconv/1.15
  • libjpeg-turbo/1.5.0
  • libmatheval/1.1.11
  • libmng/2.0.2
  • libnl/3.3.0
  • libogg/1.3.2
  • libopenal/1.17.2
  • libpcap/1.8.1
  • libpciaccess/0.13.4
  • libpipeline/1.4.2
  • libpng/1.6.27
  • libpthread-stubs/0.3
  • libpthread-stubs/0.4
  • librdf/1.0.17
  • libsigsegv/2.11
  • libsm/1.2.2
  • libsndfile/1.0.26
  • libsodium/1.0.13
  • libtiff/3.9.7
  • libtiff/4.0.6
  • libtool/2.4.6
  • libunistring/0.9.7
  • libunwind/1.1
  • libusb/1.0.22
  • libvorbis/1.3.5
  • libx11/1.6.3
  • libxau/1.0.8
  • libxaw/1.0.13
  • libxc/3.0.0
  • libxcb/1.12
  • libxcomposite/0.4.4
  • libxcursor/1.1.14
  • libxdamage/1.1.4
  • libxdmcp/1.1.2
  • libxevie/1.0.3
  • libxext/1.3.3
  • libxfixes/5.0.2
  • libxfont/1.5.2
  • libxfontcache/1.0.5
  • libxft/2.3.2
  • libxi/1.7.6
  • libxinerama/1.1.3
  • libxkbcommon/0.8.2
  • libxkbfile/1.0.9
  • libxkbui/1.0.2
  • libxml2/2.9.4
  • libxmu/1.1.2
  • libxp/1.0.3
  • libxpm/3.5.10
  • libxrandr/1.5.0
  • libxrender/0.9.10
  • libxres/1.0.7
  • libxscrnsaver/1.2.2
  • libxshmfence/1.2
  • libxslt/1.1.29
  • libxt/1.1.5
  • libxtst/1.2.2
  • libxv/1.0.10
  • libxvmc/1.0.9
  • libxxf86misc/1.0.3
  • libxxf86vm/1.1.4
  • llvm/3.8.1
  • lmdb/0.9.16
  • lmod/7.4.11
  • lua-jit/2.0.4
  • lua-luafilesystem/1_6_3
  • lua-luaposix/33.4.0
  • lua/5.3.2
  • lz4/1.7.5
  • lzip/1.19
  • lziprecover/1.19
  • lzlib/1.9
  • lzma/4.32.7
  • lzo/2.09
  • m4/1.4.18
  • magma/2.2.0
  • magma/2.5.1
  • man-db/2.7.6.1
  • matio/1.5.9
  • maven/3.3.9
  • mawk/1.3.4
  • mesa-glu/9.0.0
  • mesa/12.0.3
  • mesa/12.0.6
  • meson/0.42.0
  • metis/5.1.0
  • miniasm/0.3
  • minimap2/2.16
  • mkfontdir/1.0.7
  • mkfontscale/1.1.2
  • motif/2.3.8
  • motioncor2/1.1.0
  • motioncor2/1.2.3
  • motioncorr/2.1
  • mpc/1.0.3
  • mpfr/3.1.5
  • mshadow/20170721
  • nano/2.6.3
  • nasm/2.11.06
  • nccl/2.3.7-1
  • nccl/2.4.8-1
  • ncurses/6.0
  • netcdf-cxx/4.2
  • netcdf/4.4.1
  • nettle/3.2
  • ninja/1.8.2
  • nlopt/2.5.0
  • nnvm/20170418
  • numactl/2.0.12
  • ocaml/4.03.0
  • oce/0.18
  • oniguruma/6.1.3
  • openblas/0.2.19
  • opencv/3.3.0
  • opencv/3.4.1
  • opencv/3.4.3
  • openexr/2.3.0
  • openjdk/11.0.2
  • openjpeg/2.1
  • openmpi/2.1.0
  • openmpi/2.1.1
  • openmpi/4.0.1
  • openms/2.1.0
  • openssl/1.0.1e
  • optitype/1.3.1
  • opus/1.1.4
  • p7zip/16.02
  • pango/1.40.3
  • pango/1.40.4
  • patch/2.7.5
  • patchelf/0.9
  • pbzip2/1.1.13
  • pcre/8.40
  • perl-dbi/1.636
  • perl-extutils-makemaker/7.24
  • perl-json/2.97001
  • perl-term-readkey/2.37
  • perl-uri-escape/1.71
  • perl-xml-parser/2.44
  • perl/5.18.4
  • perl/5.24.1
  • picard/2.9.2
  • pigz/2.4
  • pixman/0.34.0
  • pkg-config/0.29.2
  • plzip/1.6
  • poppler-data/0.4.9
  • poppler/0.65.0
  • portaudio/190600_20161030
  • postgresql/9.5.3
  • postgresql/10.3
  • postgresql/11.0
  • postgresql/11.4
  • presentproto/1.0
  • printproto/1.0.5
  • proj/4.9.2
  • protobuf/3.1.0
  • protobuf/3.2.0
  • protobuf/3.3.0
  • ps-lite/20170328
  • py-mappy/2.2
  • python_cpu/2.7.12
  • python_cpu/2.7.13
  • python_cpu/2.7.14
  • python_cpu/3.6.0
  • python_cpu/3.6.1
  • python_cpu/3.6.4
  • python_cpu/3.7.1
  • python_cpu/3.7.4
  • python_gpu/2.7.12
  • python_gpu/2.7.13
  • python_gpu/2.7.14
  • python_gpu/3.6.0
  • python_gpu/3.6.1
  • python_gpu/3.6.4
  • python_gpu/3.7.1
  • python_gpu/3.7.4
  • qhull/2015.2
  • qt/4.8.6
  • qt/5.5.0
  • qt/5.5.1
  • r/3.3.3
  • r/3.4.3
  • r/3.5.1
  • randrproto/1.5.0
  • raptor/2.0.15
  • rasqal/0.9.33
  • rdma-core/20
  • readline/7.0
  • recordproto/1.14.2
  • renderproto/0.11.1
  • resourceproto/1.2.0
  • robinhood/3.1.5
  • rstudio/1.1.456
  • ruby/2.2.0
  • samtools/1.2
  • samtools/1.6
  • scala/2.12.1
  • scons/2.5.0
  • scotch/6.0.4
  • scrnsaverproto/1.2.2
  • sdl2/2.0.5
  • sed/4.2.2
  • seqtk/1.3
  • serf/1.3.8
  • setxkbmap/1.3.1
  • shared-mime-info/1.9
  • shared-mime-info/1.10
  • silo/4.10.2
  • snappy/1.1.3
  • sowing/1.1.23-p1
  • sox/14.4.2
  • sparsehash/2.0.3
  • sqlite/3.18.0
  • sra-toolkit/2.8.2-1
  • star/2.5.3a
  • sublime-text/2.0.2
  • subversion/1.9.5
  • suite-sparse/4.5.5
  • superlu/5.2.1
  • swig/2.0.12
  • swig/3.0.10
  • swig/3.0.11
  • swig/3.0.12
  • sz/1.4.9-beta
  • szip/2.1
  • tar/1.29
  • tbb/2017.5
  • tcl/8.6.6
  • texinfo/6.3
  • texlive/live
  • timidity/2.14.0
  • tk/8.6.6
  • tmux/2.4
  • tmux/2.6
  • tree/1.7.0
  • ucx/1.4.0
  • ucx/1.6.0
  • udunits2/2.2.24
  • unison/2.48.4
  • units/2.13
  • unixodbc/2.3.4
  • unzip/6.0
  • util-linux/2.29.1
  • util-linux/2.29.2
  • util-macros/1.19.1
  • uuid/1.6.2
  • vcftools/0.1.16
  • velvet/1.2.10
  • vep/93
  • videoproto/2.3.3
  • vim/8.0.0503
  • vim/8.1.1746
  • vtk/7.1.0
  • wget/1.17
  • wildmidi/0.4.1
  • wx/3.1.0
  • xauth/1.0.9
  • xbitmaps/1.1.1
  • xcb-proto/1.12
  • xcb-util-cursor/0.1.3
  • xcb-util-errors/1.0
  • xcb-util-image/0.4.0
  • xcb-util-keysyms/0.4.0
  • xcb-util-renderutil/0.3.9
  • xcb-util-wm/0.4.1
  • xcb-util/0.4.0
  • xextproto/7.3.0
  • xf86miscproto/0.9.3
  • xf86vidmodeproto/2.3.1
  • xhost/1.0.7
  • xineramaproto/1.2.1
  • xkbcomp/1.3.1
  • xkbdata/1.0.1
  • xpdf/4.00
  • xproto/7.0.29
  • xtrans/1.3.5
  • xz/5.2.3
  • yasm/1.3.0
  • zeromq/4.1.4
  • zeromq/4.2.5
  • zip/3.0
  • zlib/1.2.9
  • zlib/1.2.11
  • zsh/5.1.1

GCC 6.3.0

  • alsa-lib/1.1.4.1
  • angsd/0.925
  • ann/1.1.2
  • ant/1.9.9
  • apr-util/1.5.4
  • apr/1.5.2
  • arpack/96
  • atk/2.14.0
  • atk/2.20.0
  • atlas/3.11.34
  • atop/2.2-3
  • autoconf/2.69
  • automake/1.15
  • bamtools/2.5.1
  • bash/4.4
  • bazel/0.9.0
  • bazel/0.19.2
  • bazel/0.24.1
  • bbmap/37.36
  • bdw-gc/7.4.4
  • beast2/2.5.2
  • bedtools2/2.27.1
  • berkeley-db/5.3.28
  • berkeley-db/6.2.32
  • binutils/2.28
  • binutils/2.29.1
  • bison/3.0.4
  • bitmap/1.0.8
  • blat/35
  • blaze/3.1
  • boost/1.62.0
  • boost/1.63.0
  • boost/1.69.0
  • bowtie/1.2
  • bwa/0.7.12
  • bwa/0.7.17
  • bzip2/1.0.6
  • cairo/1.14.8
  • cairo/1.14.10
  • cgal/4.7
  • cmake/2.8.10.2
  • cmake/3.4.3
  • cmake/3.8.0
  • cmake/3.9.0
  • cmake/3.9.4
  • cmake/3.12.4
  • cmake/3.14.4
  • compositeproto/0.4.2
  • coreutils/8.26
  • cscope/15.8b
  • ctffind/4.1.8
  • cub/1.7.1
  • cuda/8.0.61
  • cuda/9.0.176
  • cuda/9.2.88
  • cuda/10.0.130
  • cuda/10.1.243
  • cudnn/5.1
  • cudnn/6.0
  • cudnn/7.0
  • cudnn/7.2
  • cudnn/7.3
  • cudnn/7.4
  • cudnn/7.5
  • cudnn/7.6.4
  • curl/7.53.1
  • curl/7.61.1
  • damageproto/1.2.1
  • dante/1.4.2
  • dbus/1.11.2
  • dbus/1.12.10
  • direnv/2.11.3
  • dmlc-core/20170508
  • dos2unix/7.3.4
  • doxygen/1.8.12
  • dri2proto/2.8
  • dri3proto/1.0
  • eigen/3.3.3
  • evieext/1.1.1
  • expat/2.2.0
  • exuberant-ctags/5.8
  • fastqc/0.11.4
  • ffmpeg/3.2.4
  • fftw/3.3.5
  • findutils/4.6.0
  • fixesproto/5.0
  • flac/1.3.2
  • flex/2.6.1
  • flex/2.6.3
  • fltk/1.3.3
  • fluidsynth/1.1.10
  • font-util/1.3.1
  • fontcacheproto/0.1.3
  • fontconfig/2.11.1
  • fontsproto/2.1.3
  • fonttosfnt/1.0.4
  • freetype/2.7
  • gatk/3.8-0
  • gawk/4.1.4
  • gdal/2.2.2
  • gdal/2.3.2
  • gdbm/1.13
  • gdk-pixbuf/2.31.2
  • geos/3.7.1
  • gettext/0.19.8.1
  • gflags/2.1.2
  • ghostscript-fonts/8.11
  • ghostscript/9.21
  • git-lfs/2.3.0
  • git/2.12.1
  • glew/2.0.0
  • glib/2.49.7
  • glib/2.50.3
  • glm/0.9.7.1
  • glog/0.3.4
  • glpk/4.61
  • glproto/1.4.17
  • gmake/4.0
  • gmp/6.1.2
  • gnat/2016
  • gnuplot/5.0.5
  • gnutls/3.5.10
  • go-bootstrap/1.4-bootstrap-20161024
  • go/1.8.1
  • go/1.11.1
  • gobject-introspection/1.49.1
  • gobject-introspection/1.49.2
  • gperf/3.0.4
  • gperftools/2.4
  • graphviz/2.40.1
  • groff/1.22.3
  • gsl/1.16
  • gsl/2.3
  • gtkplus/2.24.31
  • gts/121130
  • guile/2.0.11
  • harfbuzz/1.4.6
  • harfbuzz/1.4.7
  • hdf/4.2.12
  • hdf5/1.10.1
  • help2man/1.47.4
  • htop/2.0.2
  • htslib/1.6
  • hwloc/1.11.6
  • hwloc/1.11.10
  • hwloc/1.11.12
  • icu4c/58.2
  • id3lib/3.8.3
  • ilmbase/2.3.0
  • image-magick/7.0.2-7
  • imake/1.0.7
  • inputproto/2.3.2
  • intltool/0.51.0
  • isl/0.18
  • jansson/2.9
  • jasper/1.900.1
  • jdk/8u141-b15
  • jemalloc/4.5.0
  • jpeg/9b
  • jq/1.5
  • jsoncpp/1.7.3
  • kbproto/1.0.7
  • krb5/1.16.1
  • lcms/2.8
  • leveldb/1.20
  • lftp/4.8.1
  • libarchive/3.2.1
  • libassuan/2.4.5
  • libatomic-ops/7.4.4
  • libcerf/1.3
  • libctl/3.2.2
  • libdrm/2.4.70
  • libdwarf/20160507
  • libedit/3.1-20170329
  • libelf/0.8.13
  • libepoxy/1.4.3
  • libevent/2.0.19
  • libfabric/1.8.0
  • libffi/3.2.1
  • libfontenc/1.1.3
  • libfs/1.0.7
  • libgcrypt/1.6.2
  • libgd/2.2.4
  • libgme/0.6.2
  • libgpg-error/1.21
  • libgpg-error/1.27
  • libgpuarray/0.6.2
  • libice/1.0.9
  • libiconv/1.15
  • libjpeg-turbo/1.5.0
  • libmatheval/1.1.11
  • libmng/2.0.2
  • libnl/3.3.0
  • libogg/1.3.2
  • libpcap/1.8.1
  • libpciaccess/0.13.4
  • libpipeline/1.4.2
  • libpng/1.6.27
  • libpthread-stubs/0.3
  • librdf/1.0.17
  • libsigsegv/2.11
  • libsm/1.2.2
  • libsndfile/1.0.26
  • libsodium/1.0.13
  • libtiff/3.9.7
  • libtiff/4.0.6
  • libtool/2.4.6
  • libunistring/0.9.7
  • libunwind/1.1
  • libusb/1.0.22
  • libvorbis/1.3.5
  • libx11/1.6.3
  • libxau/1.0.8
  • libxaw/1.0.13
  • libxc/3.0.0
  • libxcb/1.12
  • libxcomposite/0.4.4
  • libxcursor/1.1.14
  • libxdamage/1.1.4
  • libxdmcp/1.1.2
  • libxevie/1.0.3
  • libxext/1.3.3
  • libxfixes/5.0.2
  • libxfont/1.5.2
  • libxfontcache/1.0.5
  • libxft/2.3.2
  • libxi/1.7.6
  • libxinerama/1.1.3
  • libxkbcommon/0.8.2
  • libxkbfile/1.0.9
  • libxkbui/1.0.2
  • libxml2/2.9.4
  • libxmu/1.1.2
  • libxp/1.0.3
  • libxpm/3.5.10
  • libxrandr/1.5.0
  • libxrender/0.9.10
  • libxres/1.0.7
  • libxscrnsaver/1.2.2
  • libxshmfence/1.2
  • libxslt/1.1.29
  • libxt/1.1.5
  • libxtst/1.2.2
  • libxv/1.0.10
  • libxvmc/1.0.9
  • libxxf86misc/1.0.3
  • libxxf86vm/1.1.4
  • lmdb/0.9.16
  • lua-jit/2.0.4
  • lua-luafilesystem/1_6_3
  • lua-luaposix/33.4.0
  • lua/5.3.2
  • lz4/1.7.5
  • lzip/1.19
  • lziprecover/1.19
  • lzlib/1.9
  • lzma/4.32.7
  • lzo/2.09
  • m4/1.4.18
  • magma/2.2.0
  • magma/2.5.1
  • man-db/2.7.6.1
  • matio/1.5.9
  • maven/3.3.9
  • mawk/1.3.4
  • mesa-glu/9.0.0
  • mesa/12.0.3
  • mesa/12.0.6
  • meson/0.42.0
  • metis/5.1.0
  • miniasm/0.3
  • minimap2/2.16
  • mkfontdir/1.0.7
  • mkfontscale/1.1.2
  • motioncor2/1.1.0
  • motioncor2/1.2.3
  • mpc/1.0.3
  • mpfr/3.1.5
  • mshadow/20170721
  • nano/2.6.3
  • nasm/2.11.06
  • nccl/2.3.7-1
  • nccl/2.4.8-1
  • ncurses/6.0
  • netcdf-cxx/4.2
  • netcdf/4.4.1
  • nettle/3.2
  • ninja/1.8.2
  • nlopt/2.5.0
  • nnvm/20170418
  • numactl/2.0.12
  • ocaml/4.03.0
  • oce/0.18
  • oniguruma/6.1.3
  • open3d/0.7.0
  • openblas/0.2.19
  • openexr/2.3.0
  • openjdk/11.0.2
  • openjpeg/2.1
  • openmpi/2.1.0
  • openmpi/4.0.1
  • openssl/1.0.1e
  • opus/1.1.4
  • p7zip/16.02
  • pango/1.40.3
  • pango/1.40.4
  • patch/2.7.5
  • patchelf/0.9
  • pbzip2/1.1.13
  • pcre/8.40
  • perl-dbi/1.636
  • perl-extutils-makemaker/7.24
  • perl-json/2.97001
  • perl-term-readkey/2.37
  • perl-uri-escape/1.71
  • perl-xml-parser/2.44
  • perl/5.24.1
  • picard/2.9.2
  • pigz/2.4
  • pixman/0.34.0
  • pkg-config/0.29.2
  • plzip/1.6
  • poppler-data/0.4.9
  • poppler/0.65.0
  • portaudio/190600_20161030
  • postgresql/9.5.3
  • postgresql/10.3
  • postgresql/11.0
  • postgresql/11.4
  • presentproto/1.0
  • printproto/1.0.5
  • proj/4.9.2
  • protobuf/3.1.0
  • protobuf/3.2.0
  • protobuf/3.3.0
  • ps-lite/20170328
  • py-mappy/2.2
  • python_cpu/2.7.12
  • python_cpu/2.7.13
  • python_cpu/3.6.0
  • python_cpu/3.6.1
  • python_cpu/3.6.4
  • python_gpu/2.7.12
  • python_gpu/2.7.13
  • python_gpu/3.6.0
  • python_gpu/3.6.1
  • python_gpu/3.6.4
  • python_gpu/3.7.1
  • qhull/2015.2
  • r/3.3.3
  • r/3.4.3
  • r/3.5.1
  • randrproto/1.5.0
  • raptor/2.0.15
  • rasqal/0.9.33
  • rdma-core/20
  • readline/7.0
  • recordproto/1.14.2
  • renderproto/0.11.1
  • resourceproto/1.2.0
  • ruby/2.2.0
  • samtools/1.2
  • samtools/1.6
  • scala/2.12.1
  • scons/2.5.0
  • scotch/6.0.4
  • scrnsaverproto/1.2.2
  • sed/4.2.2
  • seqtk/1.3
  • serf/1.3.8
  • setxkbmap/1.3.1
  • shared-mime-info/1.9
  • silo/4.10.2
  • snappy/1.1.3
  • sowing/1.1.23-p1
  • sox/14.4.2
  • sparsehash/2.0.3
  • sqlite/3.18.0
  • sra-toolkit/2.8.2-1
  • star/2.5.3a
  • sublime-text/2.0.2
  • subversion/1.9.5
  • suite-sparse/4.5.5
  • superlu/5.2.1
  • swig/2.0.12
  • swig/3.0.10
  • swig/3.0.11
  • swig/3.0.12
  • sz/1.4.9-beta
  • szip/2.1
  • tar/1.29
  • tbb/2017.5
  • tcl/8.6.6
  • texinfo/6.3
  • texlive/live
  • timidity/2.14.0
  • tk/8.6.6
  • tmux/2.4
  • tmux/2.6
  • tree/1.7.0
  • ucx/1.4.0
  • ucx/1.6.0
  • udunits2/2.2.24
  • unison/2.48.4
  • units/2.13
  • unixodbc/2.3.4
  • unzip/6.0
  • util-linux/2.29.1
  • util-linux/2.29.2
  • util-macros/1.19.1
  • uuid/1.6.2
  • vcftools/0.1.16
  • velvet/1.2.10
  • videoproto/2.3.3
  • vim/8.0.0503
  • vim/8.1.1746
  • wget/1.17
  • wx/3.1.0
  • xauth/1.0.9
  • xbitmaps/1.1.1
  • xcb-proto/1.12
  • xcb-util-cursor/0.1.3
  • xcb-util-errors/1.0
  • xcb-util-image/0.4.0
  • xcb-util-keysyms/0.4.0
  • xcb-util-renderutil/0.3.9
  • xcb-util-wm/0.4.1
  • xcb-util/0.4.0
  • xextproto/7.3.0
  • xf86miscproto/0.9.3
  • xf86vidmodeproto/2.3.1
  • xhost/1.0.7
  • xineramaproto/1.2.1
  • xkbcomp/1.3.1
  • xkbdata/1.0.1
  • xproto/7.0.29
  • xtrans/1.3.5
  • xz/5.2.3
  • yasm/1.3.0
  • zeromq/4.1.4
  • zeromq/4.2.5
  • zip/3.0
  • zlib/1.2.11
  • zsh/5.1.1

GCC 8.2.0

  • alsa-lib/1.1.4.1
  • angsd/0.925
  • ann/1.1.2
  • ant/1.9.9
  • apr-util/1.5.4
  • apr/1.5.2
  • arpack/96
  • atk/2.14.0
  • atk/2.20.0
  • atlas/3.11.34
  • atop/2.2-3
  • autoconf/2.69
  • automake/1.15
  • bamtools/2.5.1
  • bash/4.4
  • bazel/0.9.0
  • bbmap/37.36
  • bdw-gc/7.4.4
  • beast2/2.5.2
  • bedtools2/2.27.1
  • binutils/2.28
  • bison/3.0.4
  • bitmap/1.0.8
  • blat/35
  • blaze/3.1
  • boost/1.63.0
  • boost/1.69.0
  • bwa/0.7.12
  • bwa/0.7.17
  • bzip2/1.0.6
  • cairo/1.14.8
  • cairo/1.14.10
  • cairo/1.14.12
  • cgal/4.7
  • cmake/2.8.10.2
  • cmake/3.4.3
  • cmake/3.8.0
  • cmake/3.13.4
  • cmake/3.14.4
  • compositeproto/0.4.2
  • coreutils/8.26
  • cscope/15.8b
  • cub/1.7.1
  • cuda/8.0.61
  • cuda/9.0.176
  • cuda/9.2.88
  • cuda/10.0.130
  • cuda/10.1.243
  • cudnn/5.1
  • cudnn/6.0
  • cudnn/7.0
  • cudnn/7.2
  • cudnn/7.3
  • cudnn/7.4
  • cudnn/7.5
  • cudnn/7.6.4
  • curl/7.53.1
  • curl/7.61.1
  • damageproto/1.2.1
  • dante/1.4.2
  • dbus/1.11.2
  • dbus/1.12.10
  • direnv/2.11.3
  • dmlc-core/20170508
  • dos2unix/7.3.4
  • dri2proto/2.8
  • dri3proto/1.0
  • evieext/1.1.1
  • expat/2.2.0
  • exuberant-ctags/5.8
  • fastqc/0.11.4
  • ffmpeg/3.2.4
  • fftw/3.3.5
  • findutils/4.6.0
  • fixesproto/5.0
  • flac/1.3.2
  • flex/2.6.1
  • flex/2.6.3
  • fltk/1.3.3
  • fluidsynth/1.1.10
  • font-util/1.3.1
  • fontcacheproto/0.1.3
  • fontconfig/2.11.1
  • fontsproto/2.1.3
  • fonttosfnt/1.0.4
  • freetype/2.7
  • gatk/3.8-0
  • gawk/4.1.4
  • gdal/2.2.2
  • gdbm/1.13
  • gdk-pixbuf/2.31.2
  • gdk-pixbuf/2.31.4
  • geos/3.7.1
  • gettext/0.19.8.1
  • gflags/2.1.2
  • ghostscript-fonts/8.11
  • ghostscript/9.21
  • git-lfs/2.3.0
  • git/2.12.1
  • glew/2.0.0
  • glib/2.49.7
  • glib/2.50.3
  • glib/2.53.1
  • glm/0.9.7.1
  • glog/0.3.4
  • glpk/4.61
  • glproto/1.4.17
  • gmake/4.0
  • gmp/6.1.2
  • gnat/2016
  • gnuplot/5.0.5
  • gnutls/3.5.10
  • go-bootstrap/1.4-bootstrap-20161024
  • go/1.8.1
  • go/1.11.1
  • gobject-introspection/1.49.1
  • gobject-introspection/1.49.2
  • gperf/3.0.4
  • gperftools/2.4
  • graphviz/2.40.1
  • groff/1.22.3
  • gsl/1.16
  • gsl/2.3
  • gtkplus/2.24.31
  • gts/121130
  • guile/2.0.11
  • harfbuzz/1.4.6
  • harfbuzz/1.4.7
  • harfbuzz/1.4.8
  • hdf/4.2.12
  • hdf5/1.10.1
  • help2man/1.47.4
  • htop/2.0.2
  • htslib/1.6
  • hwloc/1.11.6
  • hwloc/1.11.10
  • hwloc/1.11.12
  • icu4c/58.2
  • id3lib/3.8.3
  • ilmbase/2.3.0
  • image-magick/7.0.2-7
  • imake/1.0.7
  • inputproto/2.3.2
  • intltool/0.51.0
  • isl/0.18
  • jansson/2.9
  • jasper/1.900.1
  • jdk/8u141-b15
  • jemalloc/4.5.0
  • jpeg/9b
  • jq/1.5
  • jsoncpp/1.7.3
  • kbproto/1.0.7
  • krb5/1.16.1
  • lcms/2.8
  • leveldb/1.20
  • lftp/4.8.1
  • libarchive/3.2.1
  • libassuan/2.4.5
  • libatomic-ops/7.4.4
  • libcerf/1.3
  • libctl/3.2.2
  • libdrm/2.4.70
  • libdwarf/20160507
  • libedit/3.1-20170329
  • libelf/0.8.13
  • libevent/2.0.19
  • libfabric/1.8.0
  • libffi/3.2.1
  • libfontenc/1.1.3
  • libfs/1.0.7
  • libgcrypt/1.6.2
  • libgd/2.2.4
  • libgme/0.6.2
  • libgpg-error/1.21
  • libgpg-error/1.27
  • libgpuarray/0.6.2
  • libice/1.0.9
  • libiconv/1.15
  • libjpeg-turbo/1.5.0
  • libmatheval/1.1.11
  • libmng/2.0.2
  • libnl/3.3.0
  • libogg/1.3.2
  • libopenal/1.17.2
  • libpcap/1.8.1
  • libpciaccess/0.13.4
  • libpipeline/1.4.2
  • libpng/1.6.27
  • libpthread-stubs/0.3
  • libsigsegv/2.11
  • libsm/1.2.2
  • libsndfile/1.0.26
  • libsodium/1.0.13
  • libtiff/3.9.7
  • libtiff/4.0.6
  • libtool/2.4.6
  • libunistring/0.9.7
  • libunwind/1.1
  • libusb/1.0.22
  • libvorbis/1.3.5
  • libx11/1.6.3
  • libxau/1.0.8
  • libxaw/1.0.13
  • libxc/3.0.0
  • libxcb/1.12
  • libxcomposite/0.4.4
  • libxcursor/1.1.14
  • libxdamage/1.1.4
  • libxdmcp/1.1.2
  • libxevie/1.0.3
  • libxext/1.3.3
  • libxfixes/5.0.2
  • libxfont/1.5.2
  • libxfontcache/1.0.5
  • libxft/2.3.2
  • libxi/1.7.6
  • libxinerama/1.1.3
  • libxkbcommon/0.8.2
  • libxkbfile/1.0.9
  • libxkbui/1.0.2
  • libxml2/2.9.4
  • libxmu/1.1.2
  • libxp/1.0.3
  • libxpm/3.5.10
  • libxrandr/1.5.0
  • libxrender/0.9.10
  • libxres/1.0.7
  • libxscrnsaver/1.2.2
  • libxshmfence/1.2
  • libxslt/1.1.29
  • libxt/1.1.5
  • libxv/1.0.10
  • libxvmc/1.0.9
  • libxxf86misc/1.0.3
  • libxxf86vm/1.1.4
  • lmdb/0.9.16
  • lmod/7.4.11
  • lua-jit/2.0.4
  • lua-luafilesystem/1_6_3
  • lua-luaposix/33.4.0
  • lua/5.3.2
  • lz4/1.7.5
  • lzip/1.19
  • lziprecover/1.19
  • lzlib/1.9
  • lzma/4.32.7
  • lzo/2.09
  • m4/1.4.18
  • man-db/2.7.6.1
  • matio/1.5.9
  • maven/3.3.9
  • mawk/1.3.4
  • mesa-glu/9.0.0
  • mesa/12.0.3
  • meson/0.42.0
  • metis/5.1.0
  • miniasm/0.3
  • minimap2/2.16
  • mkfontdir/1.0.7
  • mkfontscale/1.1.2
  • motioncor2/1.1.0
  • mpc/1.0.3
  • mpfr/3.1.5
  • mshadow/20170721
  • nano/2.6.3
  • nasm/2.11.06
  • nccl/2.4.8-1
  • ncurses/6.0
  • netcdf-cxx/4.2
  • netcdf/4.4.1
  • nettle/3.2
  • ninja/1.8.2
  • nlopt/2.5.0
  • nnvm/20170418
  • numactl/2.0.12
  • ocaml/4.03.0
  • oce/0.18
  • oniguruma/6.1.3
  • openblas/0.2.19
  • openexr/2.3.0
  • openjdk/11.0.2
  • openjpeg/2.1
  • openmpi/2.1.0
  • openmpi/4.0.1
  • openssl/1.0.1e
  • opus/1.1.4
  • p7zip/16.02
  • pango/1.40.3
  • pango/1.40.4
  • patch/2.7.5
  • patchelf/0.9
  • pbzip2/1.1.13
  • pcre/8.40
  • perl-dbi/1.636
  • perl-extutils-makemaker/7.24
  • perl-json/2.97001
  • perl-term-readkey/2.37
  • perl-uri-escape/1.71
  • perl-xml-parser/2.44
  • perl/5.24.1
  • picard/2.9.2
  • pigz/2.4
  • pixman/0.34.0
  • pkg-config/0.29.2
  • plzip/1.6
  • poppler-data/0.4.9
  • poppler/0.65.0
  • portaudio/190600_20161030
  • postgresql/9.5.3
  • postgresql/10.3
  • postgresql/11.0
  • postgresql/11.4
  • presentproto/1.0
  • printproto/1.0.5
  • proj/4.9.2
  • protobuf/3.1.0
  • protobuf/3.2.0
  • protobuf/3.3.0
  • ps-lite/20170328
  • py-mappy/2.2
  • qhull/2015.2
  • r/3.3.3
  • r/3.4.3
  • r/3.5.1
  • randrproto/1.5.0
  • raptor/2.0.15
  • rasqal/0.9.33
  • rdma-core/20
  • readline/7.0
  • recordproto/1.14.2
  • renderproto/0.11.1
  • resourceproto/1.2.0
  • ruby/2.2.0
  • samtools/1.2
  • samtools/1.6
  • scala/2.12.1
  • scons/2.5.0
  • scotch/6.0.4
  • scrnsaverproto/1.2.2
  • sdl2/2.0.5
  • sed/4.2.2
  • seqtk/1.3
  • serf/1.3.8
  • setxkbmap/1.3.1
  • shared-mime-info/1.9
  • silo/4.10.2
  • snappy/1.1.3
  • sowing/1.1.23-p1
  • sox/14.4.2
  • sparsehash/2.0.3
  • sqlite/3.18.0
  • sra-toolkit/2.8.2-1
  • star/2.5.3a
  • sublime-text/2.0.2
  • subversion/1.9.5
  • superlu/5.2.1
  • swig/2.0.12
  • swig/3.0.10
  • swig/3.0.11
  • swig/3.0.12
  • sz/1.4.9-beta
  • szip/2.1
  • tar/1.29
  • tbb/2017.5
  • tcl/8.6.6
  • texinfo/6.3
  • timidity/2.14.0
  • tk/8.6.6
  • tmux/2.4
  • tmux/2.6
  • tree/1.7.0
  • ucx/1.4.0
  • ucx/1.6.0
  • udunits2/2.2.24
  • unison/2.48.4
  • units/2.13
  • unixodbc/2.3.4
  • unzip/6.0
  • util-linux/2.29.1
  • util-linux/2.29.2
  • util-macros/1.19.1
  • uuid/1.6.2
  • vcftools/0.1.16
  • velvet/1.2.10
  • videoproto/2.3.3
  • vim/8.0.0503
  • vim/8.1.1746
  • wget/1.17
  • wildmidi/0.4.1
  • wx/3.1.0
  • xauth/1.0.9
  • xbitmaps/1.1.1
  • xcb-proto/1.12
  • xcb-util-cursor/0.1.3
  • xcb-util-errors/1.0
  • xcb-util-image/0.4.0
  • xcb-util-keysyms/0.4.0
  • xcb-util-renderutil/0.3.9
  • xcb-util-wm/0.4.1
  • xcb-util/0.4.0
  • xextproto/7.3.0
  • xf86miscproto/0.9.3
  • xf86vidmodeproto/2.3.1
  • xhost/1.0.7
  • xineramaproto/1.2.1
  • xkbcomp/1.3.1
  • xkbdata/1.0.1
  • xproto/7.0.29
  • xtrans/1.3.5
  • xz/5.2.3
  • yasm/1.3.0
  • zeromq/4.2.5
  • zip/3.0
  • zlib/1.2.11
  • zsh/5.1.1

Intel 18.0.1

  • abaqus/2016
  • abaqus/2019
  • alsa-lib/1.1.4.1
  • angsd/0.925
  • ant/1.9.9
  • apr-util/1.5.4
  • apr/1.5.2
  • arpack/96
  • atk/2.20.0
  • atop/2.2-3
  • autoconf/2.69
  • automake/1.15
  • bamtools/2.5.1
  • bash/4.4
  • bbmap/37.36
  • bdw-gc/7.4.4
  • beast2/2.5.2
  • bedtools2/2.27.1
  • berkeley-db/5.3.28
  • berkeley-db/6.2.32
  • binutils/2.28
  • bison/3.0.4
  • bitmap/1.0.8
  • blat/35
  • blaze/3.1
  • boost/1.63.0
  • bwa/0.7.12
  • bwa/0.7.17
  • bzip2/1.0.6
  • cairo/1.14.8
  • cmake/2.8.10.2
  • cmake/3.4.3
  • cmake/3.8.0
  • cmake/3.12.4
  • cmake/3.14.4
  • compositeproto/0.4.2
  • coreutils/8.26
  • cscope/15.8b
  • cub/1.7.1
  • cuda/8.0.61
  • cuda/9.0.176
  • cuda/9.2.88
  • cuda/10.0.130
  • cuda/10.1.243
  • cudnn/5.1
  • cudnn/6.0
  • cudnn/7.0
  • cudnn/7.2
  • cudnn/7.3
  • cudnn/7.4
  • cudnn/7.5
  • cudnn/7.6.4
  • curl/7.53.1
  • curl/7.61.1
  • damageproto/1.2.1
  • dante/1.4.2
  • dbus/1.11.2
  • dbus/1.12.10
  • dmlc-core/20170508
  • dos2unix/7.3.4
  • dri2proto/2.8
  • dri3proto/1.0
  • evieext/1.1.1
  • expat/2.2.0
  • exuberant-ctags/5.8
  • fastqc/0.11.4
  • ffmpeg/3.2.4
  • findutils/4.6.0
  • fixesproto/5.0
  • flex/2.6.1
  • flex/2.6.3
  • fltk/1.3.3
  • font-util/1.3.1
  • fontcacheproto/0.1.3
  • fontconfig/2.11.1
  • fontsproto/2.1.3
  • fonttosfnt/1.0.4
  • freetype/2.7
  • gatk/3.8-0
  • gawk/4.1.4
  • gdbm/1.13
  • gdk-pixbuf/2.31.2
  • gettext/0.19.8.1
  • gflags/2.1.2
  • ghostscript-fonts/8.11
  • ghostscript/9.21
  • git/2.12.1
  • glew/2.0.0
  • glib/2.49.7
  • glm/0.9.7.1
  • glog/0.3.4
  • glpk/4.61
  • glproto/1.4.17
  • gmake/4.0
  • gmp/6.1.2
  • gnat/2016
  • go-bootstrap/1.4-bootstrap-20161024
  • gobject-introspection/1.49.2
  • gperf/3.0.4
  • gperftools/2.4
  • groff/1.22.3
  • gsl/1.16
  • gsl/2.3
  • gtkplus/2.24.31
  • gts/121130
  • guile/2.0.11
  • harfbuzz/1.4.6
  • hdf/4.2.12
  • hdf5/1.10.2
  • help2man/1.47.4
  • htop/2.0.2
  • htslib/1.6
  • hwloc/1.11.6
  • hwloc/1.11.10
  • hwloc/1.11.12
  • icu4c/58.2
  • ilmbase/2.3.0
  • image-magick/7.0.2-7
  • imake/1.0.7
  • imod/4.9.12
  • inputproto/2.3.2
  • intltool/0.51.0
  • isl/0.18
  • jansson/2.9
  • jasper/1.900.1
  • jdk/8u141-b15
  • jemalloc/4.5.0
  • jpeg/9b
  • jq/1.5
  • jsoncpp/1.7.3
  • kbproto/1.0.7
  • krb5/1.16.1
  • lcms/2.8
  • leveldb/1.20
  • lftp/4.8.1
  • libarchive/3.2.1
  • libassuan/2.4.5
  • libatomic-ops/7.4.4
  • libctl/3.2.2
  • libdrm/2.4.70
  • libedit/3.1-20170329
  • libelf/0.8.13
  • libevent/2.0.19
  • libfabric/1.8.0
  • libffi/3.2.1
  • libfontenc/1.1.3
  • libfs/1.0.7
  • libgcrypt/1.6.2
  • libgd/2.2.4
  • libgme/0.6.2
  • libgpg-error/1.21
  • libgpuarray/0.6.2
  • libice/1.0.9
  • libiconv/1.15
  • libjpeg-turbo/1.5.0
  • libmatheval/1.1.11
  • libmng/2.0.2
  • libnl/3.3.0
  • libogg/1.3.2
  • libopenal/1.17.2
  • libpcap/1.8.1
  • libpciaccess/0.13.4
  • libpipeline/1.4.2
  • libpng/1.6.27
  • libpthread-stubs/0.3
  • librdf/1.0.17
  • libsigsegv/2.11
  • libsm/1.2.2
  • libsodium/1.0.13
  • libtiff/3.9.7
  • libtiff/4.0.6
  • libtool/2.4.6
  • libunistring/0.9.7
  • libunwind/1.1
  • libusb/1.0.22
  • libvorbis/1.3.5
  • libx11/1.6.3
  • libxau/1.0.8
  • libxaw/1.0.13
  • libxc/3.0.0
  • libxcb/1.12
  • libxcomposite/0.4.4
  • libxcursor/1.1.14
  • libxdamage/1.1.4
  • libxdmcp/1.1.2
  • libxevie/1.0.3
  • libxext/1.3.3
  • libxfixes/5.0.2
  • libxfont/1.5.2
  • libxfontcache/1.0.5
  • libxft/2.3.2
  • libxi/1.7.6
  • libxinerama/1.1.3
  • libxkbcommon/0.8.2
  • libxkbfile/1.0.9
  • libxkbui/1.0.2
  • libxml2/2.9.4
  • libxmu/1.1.2
  • libxp/1.0.3
  • libxpm/3.5.10
  • libxrandr/1.5.0
  • libxrender/0.9.10
  • libxres/1.0.7
  • libxscrnsaver/1.2.2
  • libxshmfence/1.2
  • libxslt/1.1.29
  • libxt/1.1.5
  • libxv/1.0.10
  • libxvmc/1.0.9
  • libxxf86misc/1.0.3
  • libxxf86vm/1.1.4
  • lmdb/0.9.16
  • lua-jit/2.0.4
  • lua-luafilesystem/1_6_3
  • lua-luaposix/33.4.0
  • lua/5.3.2
  • lz4/1.7.5
  • lzip/1.19
  • lziprecover/1.19
  • lzlib/1.9
  • lzma/4.32.7
  • lzo/2.09
  • m4/1.4.18
  • magma/2.5.1
  • man-db/2.7.6.1
  • matio/1.5.9
  • maven/3.3.9
  • mawk/1.3.4
  • mesa-glu/9.0.0
  • mesa/12.0.3
  • meson/0.42.0
  • metis/5.1.0
  • miniasm/0.3
  • minimap2/2.16
  • mkfontdir/1.0.7
  • mkfontscale/1.1.2
  • motioncor2/1.1.0
  • motioncor2/1.2.3
  • mpc/1.0.3
  • mpfr/3.1.5
  • mshadow/20170721
  • nano/2.6.3
  • nasm/2.11.06
  • nccl/2.4.8-1
  • ncurses/6.0
  • netcdf-cxx/4.2
  • netcdf/4.4.1
  • nettle/3.2
  • ninja/1.8.2
  • nnvm/20170418
  • numactl/2.0.12
  • ocaml/4.03.0
  • oce/0.18
  • oniguruma/6.1.3
  • openblas/0.2.19
  • openexr/2.3.0
  • openjdk/11.0.2
  • openjpeg/2.1
  • openmpi/2.1.0
  • openssl/1.0.1e
  • opus/1.1.4
  • p7zip/16.02
  • pango/1.40.3
  • patch/2.7.5
  • patchelf/0.9
  • pbzip2/1.1.13
  • pcre/8.40
  • perl-dbi/1.636
  • perl-extutils-makemaker/7.24
  • perl-json/2.97001
  • perl-term-readkey/2.37
  • perl-uri-escape/1.71
  • perl-xml-parser/2.44
  • perl/5.24.1
  • picard/2.9.2
  • pigz/2.4
  • pixman/0.34.0
  • pkg-config/0.29.2
  • plzip/1.6
  • poppler-data/0.4.9
  • poppler/0.65.0
  • portaudio/190600_20161030
  • postgresql/9.5.3
  • postgresql/10.3
  • postgresql/11.0
  • postgresql/11.4
  • presentproto/1.0
  • printproto/1.0.5
  • protobuf/3.1.0
  • protobuf/3.2.0
  • protobuf/3.3.0
  • ps-lite/20170328
  • py-mappy/2.2
  • python/2.7.13
  • python/3.6.0
  • randrproto/1.5.0
  • raptor/2.0.15
  • rasqal/0.9.33
  • readline/7.0
  • recordproto/1.14.2
  • renderproto/0.11.1
  • resourceproto/1.2.0
  • ruby/2.2.0
  • samtools/1.2
  • samtools/1.6
  • scala/2.12.1
  • scons/2.5.0
  • scotch/6.0.4
  • scrnsaverproto/1.2.2
  • sdl2/2.0.5
  • sed/4.2.2
  • seqtk/1.3
  • serf/1.3.8
  • setxkbmap/1.3.1
  • shared-mime-info/1.9
  • silo/4.10.2
  • snappy/1.1.3
  • sowing/1.1.23-p1
  • sparsehash/2.0.3
  • sqlite/3.18.0
  • sra-toolkit/2.8.2-1
  • sublime-text/2.0.2
  • subversion/1.9.5
  • suite-sparse/4.5.5
  • superlu/5.2.1
  • swig/2.0.12
  • swig/3.0.10
  • swig/3.0.11
  • swig/3.0.12
  • szip/2.1
  • tar/1.29
  • tbb/2017.5
  • tcl/8.6.6
  • texinfo/6.3
  • texlive/live
  • tk/8.6.6
  • tmux/2.4
  • tmux/2.6
  • tree/1.7.0
  • udunits2/2.2.24
  • unison/2.48.4
  • units/2.13
  • unixodbc/2.3.4
  • unzip/6.0
  • util-linux/2.29.1
  • util-linux/2.29.2
  • util-macros/1.19.1
  • vcftools/0.1.16
  • velvet/1.2.10
  • videoproto/2.3.3
  • vim/8.0.0503
  • vim/8.1.1746
  • wget/1.17
  • wildmidi/0.4.1
  • wx/3.1.0
  • xauth/1.0.9
  • xbitmaps/1.1.1
  • xcb-proto/1.12
  • xcb-util-cursor/0.1.3
  • xcb-util-errors/1.0
  • xcb-util-image/0.4.0
  • xcb-util-keysyms/0.4.0
  • xcb-util-renderutil/0.3.9
  • xcb-util-wm/0.4.1
  • xcb-util/0.4.0
  • xextproto/7.3.0
  • xf86miscproto/0.9.3
  • xf86vidmodeproto/2.3.1
  • xhost/1.0.7
  • xineramaproto/1.2.1
  • xkbcomp/1.3.1
  • xkbdata/1.0.1
  • xproto/7.0.29
  • xtrans/1.3.5
  • xz/5.2.3
  • yasm/1.3.0
  • zeromq/4.1.4
  • zeromq/4.2.5
  • zip/3.0
  • zlib/1.2.11
  • zsh/5.1.1

MPI layer

The MPI layer contains modules that are depending on a particular compiler/MPI combination.

OpenMPI 2.1.0 GCC 4.8.5

  • arpack-ng/3.4.0
  • boost/1.63.0
  • dtcmp/1.0.3
  • fftw/3.3.5
  • flann/1.9.1
  • gmsh/3.0.6
  • hdf5/1.10.1
  • hypre/2.10.1
  • hypre/2.11.1
  • hypre/2.14.0
  • julia/0.5.2
  • libcircle/0.2.1-rc.1
  • lwgrp/1.0.2
  • mpifileutils/0.7
  • mumps/5.0.1
  • neper/3.3.0
  • netcdf/4.4.1
  • netlib-scalapack/2.0.2
  • openfoam-org/4.1
  • orca/4.0.1
  • parallel-netcdf/1.8.0
  • parmetis/4.0.3
  • petsc/3.6.4
  • petsc/3.10.2
  • relion/3.0_beta
  • relion/3.0.5
  • scotch/6.0.4
  • slepc/3.6.3
  • superlu-dist/4.3
  • superlu-dist/5.1.1
  • superlu-dist/5.2.1
  • superlu-dist/5.4.0
  • trilinos/12.6.4

OpenMPI 2.1.0 GCC 6.3.0

  • arpack-ng/3.4.0
  • boost/1.63.0
  • dtcmp/1.0.3
  • fftw/3.3.5
  • gmsh/3.0.6
  • hdf5/1.10.1
  • hypre/2.10.1
  • hypre/2.11.1
  • hypre/2.14.0
  • libcircle/0.2.1-rc.1
  • lwgrp/1.0.2
  • mpifileutils/0.7
  • mumps/5.0.1
  • netcdf/4.4.1
  • netlib-scalapack/2.0.2
  • parallel-netcdf/1.8.0
  • parmetis/4.0.3
  • petsc/3.6.4
  • petsc/3.10.2
  • scotch/6.0.4
  • slepc/3.6.3
  • superlu-dist/4.3
  • superlu-dist/5.1.1
  • superlu-dist/5.2.1
  • superlu-dist/5.4.0
  • trilinos/12.6.4

OpenMPI 2.1.0 GCC 8.2.0

  • arpack-ng/3.4.0
  • boost/1.63.0
  • dtcmp/1.0.3
  • fftw/3.3.5
  • hdf5/1.10.1
  • hypre/2.10.1
  • hypre/2.11.1
  • hypre/2.14.0
  • libcircle/0.2.1-rc.1
  • lwgrp/1.0.2
  • mpifileutils/0.7
  • mumps/5.0.1
  • netcdf/4.4.1
  • netlib-scalapack/2.0.2
  • parallel-netcdf/1.8.0
  • parmetis/4.0.3
  • scotch/6.0.4
  • superlu-dist/4.3
  • superlu-dist/5.1.1
  • superlu-dist/5.2.1
  • superlu-dist/5.4.0

OpenMPI 2.1.0 Intel 18.0.1

  • arpack-ng/3.4.0
  • boost/1.63.0
  • dtcmp/1.0.3
  • hdf5/1.10.2
  • hypre/2.10.1
  • hypre/2.11.1
  • hypre/2.14.0
  • libcircle/0.2.1-rc.1
  • lwgrp/1.0.2
  • netlib-scalapack/2.0.2
  • parallel-netcdf/1.8.0
  • parmetis/4.0.3
  • scotch/6.0.4
  • superlu-dist/4.3
  • superlu-dist/5.1.1
  • superlu-dist/5.2.1
  • superlu-dist/5.4.0


OpenMPI 4.0.1 GCC 4.8.5

  • boost/1.69.0
  • hdf5/1.10.5

OpenMPI 4.0.1 GCC 6.3.0

  • boost/1.69.0
  • hdf5/1.10.5

OpenMPI 4.0.1 GCC 8.2.0

  • boost/1.69.0
  • hdf5/1.10.5