Difference between revisions of "Python/Example"
From ScientificComputing
(Created page with "As an example for running a Python script on the cluster, we use the built-in tests of the scientific Python packages numpy and scipy. [leonhard@euler02 ~]$ module load pyth...") |
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As an example for running a Python script on the cluster, we use the built-in tests of the scientific Python packages numpy and scipy. | As an example for running a Python script on the cluster, we use the built-in tests of the scientific Python packages numpy and scipy. | ||
| − | [leonhard@euler02 ~]$ module load python/3.3.3 | + | [leonhard@euler02 ~]$ '''module load python/3.3.3''' |
Autoloading openblas/0.2.13_seq | Autoloading openblas/0.2.13_seq | ||
| − | [leonhard@euler02 ~]$ cat test_python.py | + | [leonhard@euler02 ~]$ '''cat test_python.py''' |
import numpy | import numpy | ||
import scipy | import scipy | ||
numpy.test() | numpy.test() | ||
scipy.test() | scipy.test() | ||
| − | [leonhard@euler02 ~]$ bsub -n 1 -W 4:00 -R "rusage[mem=1024]" python ./test_python.py | + | [leonhard@euler02 ~]$ '''bsub -n 1 -W 4:00 -R "rusage[mem=1024]" python ./test_python.py''' |
Generic job. | Generic job. | ||
Job <25518323> is submitted to queue <normal.4h>. | Job <25518323> is submitted to queue <normal.4h>. | ||
| − | [leonhard@euler02 ~]$ bjobs | + | [leonhard@euler02 ~]$ '''bjobs''' |
JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | ||
25518323 leonhard PEND normal.4h euler02 *python.py Aug 23 15:05 | 25518323 leonhard PEND normal.4h euler02 *python.py Aug 23 15:05 | ||
| − | [leonhard@euler02 ~]$ bjobs | + | [leonhard@euler02 ~]$ '''bjobs''' |
JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | ||
25518323 leonhard RUN normal.4h euler02 e1408 *python.py Aug 23 15:05 | 25518323 leonhard RUN normal.4h euler02 e1408 *python.py Aug 23 15:05 | ||
| − | [leonhard@euler02 ~]$ bjobs | + | [leonhard@euler02 ~]$ '''bjobs''' |
No unfinished job found | No unfinished job found | ||
| − | [leonhard@euler02 ~]$ grep Ran lsf.o25518323 | + | [leonhard@euler02 ~]$ '''grep Ran lsf.o25518323''' |
Ran 6139 tests in 114.985s | Ran 6139 tests in 114.985s | ||
Ran 20195 tests in 366.931s | Ran 20195 tests in 366.931s | ||
Revision as of 15:45, 23 August 2016
As an example for running a Python script on the cluster, we use the built-in tests of the scientific Python packages numpy and scipy.
[leonhard@euler02 ~]$ module load python/3.3.3 Autoloading openblas/0.2.13_seq [leonhard@euler02 ~]$ cat test_python.py import numpy import scipy numpy.test() scipy.test() [leonhard@euler02 ~]$ bsub -n 1 -W 4:00 -R "rusage[mem=1024]" python ./test_python.py Generic job. Job <25518323> is submitted to queue <normal.4h>. [leonhard@euler02 ~]$ bjobs JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME 25518323 leonhard PEND normal.4h euler02 *python.py Aug 23 15:05 [leonhard@euler02 ~]$ bjobs JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME 25518323 leonhard RUN normal.4h euler02 e1408 *python.py Aug 23 15:05 [leonhard@euler02 ~]$ bjobs No unfinished job found [leonhard@euler02 ~]$ grep Ran lsf.o25518323 Ran 6139 tests in 114.985s Ran 20195 tests in 366.931s
