Difference between revisions of "R/Batch"
From ScientificComputing
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bsub [LSF options] "R --vanilla --slave < inputfile.R > outputfile" | bsub [LSF options] "R --vanilla --slave < inputfile.R > outputfile" | ||
| − | Here you need to replace ''[LSF options]'' with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the | + | Here you need to replace ''[LSF options]'' with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the [[Using_the_batch_system|batch system]]. In this case, stdout is redirected into "outputfile". |
Revision as of 12:16, 23 August 2016
For small tests, pre- and post-processing with R, you can start an interactive sessions on the login nodes. All other R jobs have to be submitted through the batch system. You can start an R job (inputfile.R) in batch mode with the following command:
bsub [LSF options] "R --vanilla --slave < inputfile.R > outputfile"
Here you need to replace [LSF options] with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the batch system. In this case, stdout is redirected into "outputfile".
