Difference between revisions of "R/Example"
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As an example for running R we use the R-25-Benchmark, which can be downloaded from http://r.research.att.com/benchmarks/. It consists of the R script R-benchmark-25.R. | As an example for running R we use the R-25-Benchmark, which can be downloaded from http://r.research.att.com/benchmarks/. It consists of the R script R-benchmark-25.R. | ||
| − | [ | + | [leonhard@euler01 test]$ '''module load new gcc/4.8.2 r/3.3.0''' |
Using OpenBLAS build of R-3.3.0 | Using OpenBLAS build of R-3.3.0 | ||
| − | [ | + | [leonhard@euler01 test]$ '''wget http://r.research.att.com/benchmarks/R-benchmark-25.R >& /dev/null''' |
| − | [ | + | [leonhard@euler01 test]$ '''ls''' |
R-benchmark-25.R | R-benchmark-25.R | ||
| − | [ | + | [leonhard@euler01 test]$ '''bsub -n 1 -W 0:10 -R "rusage[mem=1024]" "R --vanilla --slave < R-benchmark-25.R > result.out"''' |
Generic job. | Generic job. | ||
Job <22467786> is submitted to queue <normal.4h>. | Job <22467786> is submitted to queue <normal.4h>. | ||
| − | [ | + | [leonhard@euler01 test]$ '''bjobs''' |
JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | ||
| − | 22467786 | + | 22467786 leonhard PEND normal.4h euler01 *esult.out Jul 6 14:49 |
| − | [ | + | [leonhard@euler01 test]$ '''bjobs''' |
JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME | ||
| − | 22467786 | + | 22467786 leonhard RUN normal.4h euler01 e1173 *esult.out Jul 6 14:49 |
| − | [ | + | [leonhard@euler01 test]$ '''bjobs''' |
No unfinished job found | No unfinished job found | ||
| − | [ | + | [leonhard@euler01 test]$ '''ls''' |
lsf.o22467786 R-benchmark-25.R result.out | lsf.o22467786 R-benchmark-25.R result.out | ||
R code examples can be found at [https://cran.r-project.org/doc/contrib/Owen-TheRGuide.pdf CRAN] | R code examples can be found at [https://cran.r-project.org/doc/contrib/Owen-TheRGuide.pdf CRAN] | ||
Revision as of 12:41, 10 August 2016
As an example for running R we use the R-25-Benchmark, which can be downloaded from http://r.research.att.com/benchmarks/. It consists of the R script R-benchmark-25.R.
[leonhard@euler01 test]$ module load new gcc/4.8.2 r/3.3.0 Using OpenBLAS build of R-3.3.0 [leonhard@euler01 test]$ wget http://r.research.att.com/benchmarks/R-benchmark-25.R >& /dev/null [leonhard@euler01 test]$ ls R-benchmark-25.R [leonhard@euler01 test]$ bsub -n 1 -W 0:10 -R "rusage[mem=1024]" "R --vanilla --slave < R-benchmark-25.R > result.out" Generic job. Job <22467786> is submitted to queue <normal.4h>. [leonhard@euler01 test]$ bjobs JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME 22467786 leonhard PEND normal.4h euler01 *esult.out Jul 6 14:49 [leonhard@euler01 test]$ bjobs JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME 22467786 leonhard RUN normal.4h euler01 e1173 *esult.out Jul 6 14:49 [leonhard@euler01 test]$ bjobs No unfinished job found [leonhard@euler01 test]$ ls lsf.o22467786 R-benchmark-25.R result.out
R code examples can be found at CRAN
