RAxML/Batch

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Revision as of 07:20, 31 January 2017 by Sfux (talk | contribs) (Created page with "You can submit a RAxML job in batch mode with the following command: bsub [LSF options] "raxmlHPC-HYBRID-AVX [raxml options]" or bsub [LSF options] "raxmlHPC-PTHREADS-AVX...")

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You can submit a RAxML job in batch mode with the following command:

bsub [LSF options] "raxmlHPC-HYBRID-AVX [raxml options]"

or

bsub [LSF options] "raxmlHPC-PTHREADS-AVX [raxml options]

Here you need to replace [raxml options] with raxml command line options (please run raxmlHPC-HYBRID-AVX -h for getting a list of all command line options) and [LSF options] with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the batch system.