Difference between revisions of "Sandbox Home"

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=== Quick guide ===
=== Quick guide ===
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<div style="background: #BFE5D9;" class="button">
[[Sandbox Accessing the clusters| '''Accessing the clusters''']]
[[Accessing the cluster| '''Accessing the cluster''']]
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[[running applications| '''Tutorials''']]
[[running applications| '''Examples''']]

Revision as of 09:19, 1 October 2021

Welcome to ETH Scientific and High Performance Computing Wiki

Quick guide

Helpers and support


NvidiaDGX1 cropped1.jpg


Most recent software installations

Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.

Euler (new software stack,see complete list): Leonhard Open (see complete list):
matlab/R2022a (Core)
spaceranger/2.0.0 (Core)
rosetta/3.13 (gcc 8.2.0, openmpi 4.1.4)
nextflow/22.04.4 (gcc 8.2.0)
nextflow/22.04.4 (gcc 6.3.0)
nextflow/22.04.4 (gcc 4.8.5)
nextflow/22.04.4 (intel 19.1.0)
virify/0.4.0 (Core)
atacprimertool/1.0 (gcc 4.8.5)
cudnn/ (intel 19.1.0)
cudnn/ (gcc 8.2.0)
cudnn/ (gcc 6.3.0)
cudnn/ (gcc 4.8.5)
kneaddata/0.10 (gcc 6.3.0)
kneaddata/0.10 (gcc 4.8.5)
trimmomatic/0.33 (gcc 8.2.0)
trimmomatic/0.33 (gcc 6.3.0)
trimmomatic/0.33 (gcc 4.8.5)
checkm/1.1.2 (gcc 6.3.0)
checkm/1.1.2 (gcc 4.8.5)

trimgalore/0.6.6 (gcc 4.8.5)
multiqc/1.11 (gcc 4.8.5)
cutadapt/3.4 (gcc 4.8.5)
bismark/0.23.0 (gcc 4.8.5)
r/4.1.0 (gcc 8.2.0)
r/4.1.0 (gcc 6.3.0)
r/4.1.0 (gcc 4.8.5)
fastq-screen/0.14.1 (gcc 6.3.0)
fastq-screen/0.14.1 (gcc 4.8.5)
bismark/0.23.0 (intel 18.0.1)
bismark/0.23.0 (gcc 8.2.0)
bismark/0.23.0 (gcc 6.3.0)
trimgalore/0.6.6 (intel 18.0.1)
trimgalore/0.6.6 (gcc 8.2.0)
trimgalore/0.6.6 (gcc 6.3.0)
fastqc/0.11.9 (intel 18.0.1)
fastqc/0.11.9 (gcc 8.2.0)
fastqc/0.11.9 (gcc 6.3.0)
fastqc/0.11.9 (gcc 4.8.5)
bowtie2/2.4.4 (intel 18.0.1)