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= Welcome to the Scientific Computing Wiki =
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__NOTOC__
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=Welcome to the scientific computing wiki=
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<td style="width: 30%; background: white; text-align: left;">
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<td style="width: 22%; text-align: left;">
[[Image:ETH_Zurich_Euler_II_cropped.jpeg|300px]]
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=== Quick guide ===
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<div style="background: #BFE5D9;" class="button">
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[[Accessing the cluster| '''Accessing the cluster''']]
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</div>
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<div style="background: #BFE5D9;" class="button">
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[[Storage and data transfer| '''Storage and data transfer''']]
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</div>
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<div style="background: #BFE5D9;" class="button">
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[[Modules and applications | '''Modules and applications''']]
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</div>
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<div style="background: #BFE5D9;" class="button>
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[[Job management with LSF| '''Job management with LSF''' ]]
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</div>
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<div style="background: #BFE5D9;" class=button>
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[[running applications| '''Examples''']]
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</div>
 
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<td style="width: 40%; background: white; text-align: left;>
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<td style="width: 22%;>
This wiki is the primary source of information for the services provided by the ID SIS HPC group. We are operating and maintaining the central HPC clusters of ETH Zurich and provide services to our scientific community. [[Getting started|Get started with the clusters!]]
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</td>
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=== Helpers and support ===
<td style="width: 20%; background: white; text-align: center;">
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<div style="background: #b2d9eac8;" class="button">
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[https://scicomp.ethz.ch/lsf_submission_line_advisor/ '''LSF Submission Line Advisor''']
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</div>
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<div style="background: #b2d9eac8;" class="button">
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[[FAQ|'''FAQ''']]
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<div style="background: #b2d9eac8;" class="button">
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[[Euler_applications_and_libraries|'''Applications overview''']]
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<div style="background: #b2d9eac8;" class="button">
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[http://smartdesk.ethz.ch '''Smartdesk''']
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<div style="background: #b2d9eac8;" class="button">
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[mailto:cluster-support@id.ethz.ch '''Cluster support''']
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<td style="width: 42%;" valign="middle" >[[Image:NvidiaDGX1_cropped1.jpg| 500px]]</td>
 
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== News ==
 
14 Jan 2021
 
  
We are now introducing a new process for requesting an account for the HPC clusters of ETH. This change only affects new cluster accounts. For existing cluster accounts that have already been verified, no action needs to be taken. [[New account request process for HPC clusters|Read more...]]
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==News==
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{{:News}}
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[[News|''More...'']]
  
== Clusters & Servers ==
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==Most recent software installations==
{|class="wikitable" style="text-align: center; width: 45%;"
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Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.
! style="width:20%;"|[[Euler|Euler]]
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{| style="width: 100%; text-align:left;"
! style="width:20%;"|[[Leonhard|Leonhard Open]]
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! style="width: 50%"|Euler ('''new software stack''', [[Euler_applications_and_libraries|see complete list]]):
! style="width:20%;"|[[Leonhard|Leonhard Med]]
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! style="width: 50%"|
! style="width:20%;"|[[MATLAB_distributed_computing_server|MATLAB server]]
 
! style="width:20%;"|[[CLC_genomics_server|CLC genomics server]]
 
|-
 
|<include nopre wikitext src="/cluster/wiki/auto/service_status/euler_status"/>
 
|<include nopre wikitext src="/cluster/wiki/auto/service_status/leonhard_open_status"/>
 
|<include nopre wikitext src="/cluster/wiki/auto/service_status/leonhard_med_status"/>
 
|<include nopre wikitext src="/cluster/wiki/auto/service_status/calculus_status"/>
 
|<include nopre wikitext src="/cluster/wiki/auto/service_status/clc_status"/>
 
|}
 
 
 
{|
 
| '''Green'''
 
|:
 
|Service is '''fully operational'''
 
|-
 
|'''Orange'''
 
|:
 
|Service is '''partially operational''' or still in '''beta testing phase'''
 
 
|-
 
|-
|'''Red'''
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|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler" />
|:
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|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler2" />
|Service is '''unavailable'''
 
 
|}
 
|}
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<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/etimestamp" />

Latest revision as of 07:11, 19 April 2022

Welcome to the scientific computing wiki

Quick guide

Helpers and support

FAQ

NvidiaDGX1 cropped1.jpg

News

More...

Most recent software installations

Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.

Euler (new software stack, see complete list):
matlab/R2022a (Core)
spaceranger/2.0.0 (Core)
rosetta/3.13 (gcc 8.2.0, openmpi 4.1.4)
nextflow/22.04.4 (gcc 8.2.0)
nextflow/22.04.4 (gcc 6.3.0)
nextflow/22.04.4 (gcc 4.8.5)
nextflow/22.04.4 (intel 19.1.0)
virify/0.4.0 (Core)
atacprimertool/1.0 (gcc 4.8.5)
cudnn/8.4.0.27 (intel 19.1.0)
cudnn/8.4.0.27 (gcc 8.2.0)
cudnn/8.4.0.27 (gcc 6.3.0)
cudnn/8.4.0.27 (gcc 4.8.5)
kneaddata/0.10 (gcc 6.3.0)
kneaddata/0.10 (gcc 4.8.5)
trimmomatic/0.33 (gcc 8.2.0)
trimmomatic/0.33 (gcc 6.3.0)
trimmomatic/0.33 (gcc 4.8.5)
checkm/1.1.2 (gcc 6.3.0)
checkm/1.1.2 (gcc 4.8.5)

trf/4.09.1 (Core)
trimgalore/0.6.6 (intel 19.1.0)
trimgalore/0.6.6 (gcc 8.2.0)
trimgalore/0.6.6 (gcc 6.3.0)
trimgalore/0.6.6 (gcc 4.8.5)
hmmer/3.3.2 (intel 19.1.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 8.2.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 6.3.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 4.8.5, openmpi 4.1.4)
spectra/1.0.1 (intel 19.1.0)
spectra/1.0.1 (gcc 9.3.0)
spectra/1.0.1 (gcc 8.2.0)
spectra/1.0.1 (gcc 6.3.0)
spectra/1.0.1 (gcc 4.8.5)
adf/2022.103 (Core)
adf/2021.102 (Core)
blast-plus/2.12.0 (gcc 8.2.0)
blast-plus/2.12.0 (gcc 6.3.0)
freetype/2.11.1 (intel 19.1.0)
freetype/2.11.1 (gcc 8.2.0)

List of recently installed software has been updated on Thu Aug 11 16:24:34 CEST 2022