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= Welcome to ETH Scientific and High Performance Computing Wiki =
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__NOTOC__
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=Welcome to the scientific computing wiki=
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[[Image:NvidiaDGX1_cropped1.jpg| 420px]]
 
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<table style="width: 95%; border-spacing: 20px;">
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<td style="width: 22%; text-align: left;">
 
=== Quick guide ===
 
=== Quick guide ===
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[[Accessing the cluster| '''Accessing the cluster''']]
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[[Storage and data transfer| '''Storage and data transfer''']]
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</div>
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[[Modules and applications | '''Modules and applications''']]
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[[Job management with LSF| '''Job management with LSF''' ]]
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<div style="background: #BFE5D9;" class=button>
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[[running applications| '''Examples''']]
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=== Helpers and support ===
[[Sandbox Accessing the clusters| '''1. Accessing the clusters''']]
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<div style="background: #b2d9eac8;" class="button">
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[https://scicomp.ethz.ch/lsf_submission_line_advisor/ '''LSF Submission Line Advisor''']
 
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[[FAQ|'''FAQ''']]
[[Storage and data transfer| '''2. Storage and data transfer''']]
 
 
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[[Euler_applications_and_libraries|'''Applications overview''']]
[[Modules and applications | '''3. Modules and applications''']]
 
 
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[http://smartdesk.ethz.ch '''Smartdesk''']
[[Job management with LSF| '''4. Job management with LSF''' ]]
 
 
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[mailto:cluster-support@id.ethz.ch '''Cluster support''']
[[running applications| '''5. Tutorials''']]
 
 
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<td style="width: 42%;" valign="middle" >[[Image:NvidiaDGX1_cropped1.jpg| 500px]]</td>
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</table>
== [[News]] ==
 
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<td style="width: 22%; background: white;">
 
[[New account request process for HPC clusters|'''New account request process for Euler and Leonhard Open''']]
 
 
14.01.2021
 
  
We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. [[New account request process for HPC clusters|Read more...]]
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==News==
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{{:News}}
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[[News|''More...'']]
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<td style="width: 22%; background: white;">
 
[[Upcoming Euler VII expansion|'''Upcoming Euler VII expansion''']]
 
 
 
14.04.2020
 
 
 
The next major expansion of the Euler cluster — Euler VII — will be based on the same kind of compute nodes as Euler VI
 
[[Upcoming Euler VII expansion|Read more...]]
 
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</td>
 
<td style="width: 22%; background: white;">
 
[[COVID-19|'''COVID-19 — Cluster operation during state of emergency at ETH''']]
 
 
 
17.03.2020
 
 
 
As announced by President Joël Mesot in the evening of March 16 (see email), ETH will be operating in a state of emergency starting today. Most employees are required to work from home. [[COVID-19|Read more...]]
 
 
 
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<td style="width: 22%; background: white;">
 
[[Jupyter on Euler and Leonhard Open|'''Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open''']]
 
 
 
27.09.2019
 
 
 
Since Jupyter notebooks are becoming more widely used among the scientific community, the HPC group developed a script that you can run on your local computer. This shell script then starts a Jupyter notebook in a batch job on Euler/Leonhard Open (depending on which cluster you choose) and connects your local browser with it. [[Jupyter on Euler and Leonhard Open|Read more...]]
 
 
 
</td>
 
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</table>
 
  
 
==Most recent software installations==
 
==Most recent software installations==
 
Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.
 
Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.
 
{| style="width: 100%; text-align:left;"
 
{| style="width: 100%; text-align:left;"
! style="width: 50%"|Euler ('''new software stack''',[[Euler_applications_and_libraries|see complete list]]):
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! style="width: 50%"|Euler ('''new software stack''', [[Euler_applications_and_libraries|see complete list]]):
! style="width: 50%"|Leonhard Open ([[Leonhard_applications_and_libraries|see complete list]]):
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! style="width: 50%"|
 
|-
 
|-
 
|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler" />
 
|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler" />
|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/leonhard" />
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|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler2" />
 
|}
 
|}
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<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/etimestamp" />

Latest revision as of 07:11, 19 April 2022

Welcome to the scientific computing wiki

Quick guide

Helpers and support

FAQ

NvidiaDGX1 cropped1.jpg

News

More...

Most recent software installations

Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.

Euler (new software stack, see complete list):
matlab/R2022a (Core)
spaceranger/2.0.0 (Core)
rosetta/3.13 (gcc 8.2.0, openmpi 4.1.4)
nextflow/22.04.4 (gcc 8.2.0)
nextflow/22.04.4 (gcc 6.3.0)
nextflow/22.04.4 (gcc 4.8.5)
nextflow/22.04.4 (intel 19.1.0)
virify/0.4.0 (Core)
atacprimertool/1.0 (gcc 4.8.5)
cudnn/8.4.0.27 (intel 19.1.0)
cudnn/8.4.0.27 (gcc 8.2.0)
cudnn/8.4.0.27 (gcc 6.3.0)
cudnn/8.4.0.27 (gcc 4.8.5)
kneaddata/0.10 (gcc 6.3.0)
kneaddata/0.10 (gcc 4.8.5)
trimmomatic/0.33 (gcc 8.2.0)
trimmomatic/0.33 (gcc 6.3.0)
trimmomatic/0.33 (gcc 4.8.5)
checkm/1.1.2 (gcc 6.3.0)
checkm/1.1.2 (gcc 4.8.5)

trf/4.09.1 (Core)
trimgalore/0.6.6 (intel 19.1.0)
trimgalore/0.6.6 (gcc 8.2.0)
trimgalore/0.6.6 (gcc 6.3.0)
trimgalore/0.6.6 (gcc 4.8.5)
hmmer/3.3.2 (intel 19.1.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 8.2.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 6.3.0, openmpi 4.1.4)
hmmer/3.3.2 (gcc 4.8.5, openmpi 4.1.4)
spectra/1.0.1 (intel 19.1.0)
spectra/1.0.1 (gcc 9.3.0)
spectra/1.0.1 (gcc 8.2.0)
spectra/1.0.1 (gcc 6.3.0)
spectra/1.0.1 (gcc 4.8.5)
adf/2022.103 (Core)
adf/2021.102 (Core)
blast-plus/2.12.0 (gcc 8.2.0)
blast-plus/2.12.0 (gcc 6.3.0)
freetype/2.11.1 (intel 19.1.0)
freetype/2.11.1 (gcc 8.2.0)

List of recently installed software has been updated on Thu Aug 11 16:24:34 CEST 2022