Difference between revisions of "Sandbox Home"

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__NOTOC__
 
__NOTOC__
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= Welcome to ETH Scientific and High Performance Computing Wiki =
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=Welcome to the scientific computing wiki=
 
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=== Quick guide ===
 
=== Quick guide ===
 
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[[Sandbox Accessing the clusters| '''Accessing the clusters''']]
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[[Accessing the cluster| '''Accessing the cluster''']]
 
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</div>
 
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[[Job management with LSF| '''Job management with LSF''' ]]
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[[Job_management_with_SLURM| '''Job management with Slurm''' ]]
 
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[[running applications| '''Tutorials''']]
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[[running applications| '''Examples''']]
 
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=== Helpers and support ===
 
=== Helpers and support ===
 
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[https://scicomp.ethz.ch/lsf_submission_line_advisor/ '''LSF Submission Line Advisor''']
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[https://scicomp.ethz.ch/public/lsla/index2.html '''Slurm/LSF Submission Line Advisor''']
 
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== [[News]] ==
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==News==
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{{:News}}
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[[News|''More...'']]
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<!--- News 1 --->
 
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[[Setting_permanent_default_for_software_stack_upon_login|'''Script to set a permanent default for software stack initialized on Euler upon login''']]
 
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20.01.2021
 
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On Euler, you can now set the new software stack as a permanent default upon login [[Setting_permanent_default_for_software_stack_upon_login|Read more...]]
 
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<!--- News 2 --->
 
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[[New account request process for HPC clusters|'''New account request process for Euler and Leonhard Open''']]
 
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14.01.2021
 
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We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. [[New account request process for HPC clusters|Read more...]]
 
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<!--- News 3 --->
 
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[[COVID-19|'''COVID-19 — Cluster operation during state of emergency at ETH''']]
 
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17.03.2020
 
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As announced by President Joël Mesot in the evening of March 16 (see email), ETH will be operating in a state of emergency starting today. Most employees are required to work from home. [[COVID-19|Read more...]]
 
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[[Jupyter on Euler and Leonhard Open|'''Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open''']]
 
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27.09.2019
 
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Since Jupyter notebooks are becoming more widely used among the scientific community, the HPC group developed a script that you can run on your local computer. This shell script then starts a Jupyter notebook in a batch job on Euler/Leonhard Open (depending on which cluster you choose) and connects your local browser with it. [[Jupyter on Euler and Leonhard Open|Read more...]]
 
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==Most recent software installations==
 
==Most recent software installations==
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Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.
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Twenty most recent software installations. The list is based on the last modification time of the module files.
 
{| style="width: 100%; text-align:left;"
 
{| style="width: 100%; text-align:left;"
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! style="width: 50%"|Euler ('''new software stack''',[[Euler_applications_and_libraries|see complete list]]):
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! style="width: 50%"|Euler new software stack ([[Euler_applications_and_libraries|see complete list]]):
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! style="width: 50%"|Leonhard Open ([[Leonhard_applications_and_libraries|see complete list]]):
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! style="width: 50%"|
 
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|-
 
|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler" />
 
|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler" />
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|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/leonhard" />
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|<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/euler2" />
 
|}
 
|}
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<include nopre wikitext src="/cluster/wiki/auto/spack_module_tables/recent/etimestamp" />

Latest revision as of 22:21, 26 October 2023

Welcome to the scientific computing wiki

Quick guide

Accessing the cluster

Storage and data transfer

Modules and applications

Job management with Slurm

Examples

Helpers and support

Slurm/LSF Submission Line Advisor

FAQ

Applications overview

Smartdesk

Cluster support

NvidiaDGX1 cropped1.jpg

News


More...

Most recent software installations

Twenty most recent software installations. The list is based on the last modification time of the module files.

Euler new software stack (see complete list):
triangle/1.6 (intel 19.1.0)
triangle/1.6 (gcc 8.2.0)
triangle/1.6 (gcc 6.3.0)
triangle/1.6 (gcc 11.4.0)
triangle/1.6 (gcc 4.8.5)
picard/3.1.1 (intel 19.1.0)
picard/3.1.1 (gcc 11.4.0)
picard/3.1.1 (gcc 8.2.0)
picard/3.1.1 (gcc 6.3.0)
picard/3.1.1 (gcc 4.8.5)
gatk/4.4.0.0 (intel 19.1.0)
gatk/4.4.0.0 (gcc 11.4.0)
gatk/4.4.0.0 (gcc 8.2.0)
gatk/4.4.0.0 (gcc 6.3.0)
gatk/4.4.0.0 (gcc 4.8.5)
openjdk/21 (intel 19.1.0)
openjdk/21 (gcc 8.2.0)
openjdk/21 (gcc 6.3.0)
openjdk/21 (gcc 4.8.5)
bbmap/39.05 (intel 19.1.0)

bbmap/37.36 (intel 19.1.0)
bbmap/39.05 (gcc 11.4.0)
bbmap/39.05 (gcc 8.2.0)
bbmap/37.36 (gcc 8.2.0)
bbmap/39.05 (gcc 6.3.0)
bbmap/37.36 (gcc 6.3.0)
bbmap/39.05 (gcc 4.8.5)
bbmap/37.36 (gcc 4.8.5)
raxml-ng/1.2.0 (gcc 11.4.0, openmpi 4.1.4)
raxml-ng/1.2.0 (gcc 8.2.0, openmpi 4.1.4)
raxml-ng/1.2.0 (gcc 6.3.0, openmpi 4.1.4)
stacks/2.65 (gcc 8.2.0)
stacks/2.65 (gcc 6.3.0)
stacks/2.65 (gcc 11.4.0)
libtheora/1.1.1 (gcc 11.4.0)
freetype/2.10.2 (gcc 11.4.0)
scotch/6.1.2 (gcc 11.4.0, openmpi 4.1.4)
lftp/4.9.2 (gcc 8.2.0)
lftp/4.9.2 (gcc 6.3.0)
lftp/4.9.2 (gcc 4.8.5)

List of recently installed software has been updated on Thu Nov 30 16:50:34 CET 2023

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