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Welcome to ETH Scientific and High Performance Computing Wiki

NvidiaDGX1 cropped1.jpg

Quick guide


New account request process for Euler and Leonhard Open


We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. Read more...

Upcoming Euler VII expansion


The next major expansion of the Euler cluster — Euler VII — will be based on the same kind of compute nodes as Euler VI Read more...

COVID-19 — Cluster operation during state of emergency at ETH


As announced by President Joël Mesot in the evening of March 16 (see email), ETH will be operating in a state of emergency starting today. Most employees are required to work from home. Read more...

Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open


Since Jupyter notebooks are becoming more widely used among the scientific community, the HPC group developed a script that you can run on your local computer. This shell script then starts a Jupyter notebook in a batch job on Euler/Leonhard Open (depending on which cluster you choose) and connects your local browser with it. Read more...

Most recent software installations

Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.

Euler (new software stack,see complete list): Leonhard Open (see complete list):
picard/3.1.1 (intel 19.1.0)
picard/3.1.1 (gcc 11.4.0)
picard/3.1.1 (gcc 8.2.0)
picard/3.1.1 (gcc 6.3.0)
picard/3.1.1 (gcc 4.8.5)
gatk/ (intel 19.1.0)
gatk/ (gcc 11.4.0)
gatk/ (gcc 8.2.0)
gatk/ (gcc 6.3.0)
gatk/ (gcc 4.8.5)
openjdk/21 (intel 19.1.0)
openjdk/21 (gcc 8.2.0)
openjdk/21 (gcc 6.3.0)
openjdk/21 (gcc 4.8.5)
bbmap/39.05 (intel 19.1.0)
bbmap/37.36 (intel 19.1.0)
bbmap/39.05 (gcc 11.4.0)
bbmap/39.05 (gcc 8.2.0)
bbmap/37.36 (gcc 8.2.0)
bbmap/39.05 (gcc 6.3.0)

trimgalore/0.6.6 (gcc 4.8.5)
multiqc/1.11 (gcc 4.8.5)
cutadapt/3.4 (gcc 4.8.5)
bismark/0.23.0 (gcc 4.8.5)
r/4.1.0 (gcc 8.2.0)
r/4.1.0 (gcc 6.3.0)
r/4.1.0 (gcc 4.8.5)
fastq-screen/0.14.1 (gcc 6.3.0)
fastq-screen/0.14.1 (gcc 4.8.5)
bismark/0.23.0 (intel 18.0.1)
bismark/0.23.0 (gcc 8.2.0)
bismark/0.23.0 (gcc 6.3.0)
trimgalore/0.6.6 (intel 18.0.1)
trimgalore/0.6.6 (gcc 8.2.0)
trimgalore/0.6.6 (gcc 6.3.0)
fastqc/0.11.9 (intel 18.0.1)
fastqc/0.11.9 (gcc 8.2.0)
fastqc/0.11.9 (gcc 6.3.0)
fastqc/0.11.9 (gcc 4.8.5)
bowtie2/2.4.4 (intel 18.0.1)




Cluster Support