Difference between revisions of "Sandbox Home"

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[[New account request process for HPC clusters|'''New account request process for Euler and Leonhard Open''']]
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[[Setting_permanent_default_for_software_stack_upon_login|'''Script to set a permanent default for software stack initialized on Euler upon login''']]
  
14.01.2021
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20 Apr 2021  
  
We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. [[New account request process for HPC clusters|Read more...]]
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On Euler, you can now set the new software stack as a permanent default upon login [[Setting_permanent_default_for_software_stack_upon_login|Read more...]]
 
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[[Upcoming Euler VII expansion|'''Upcoming Euler VII expansion''']]
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[[New account request process for HPC clusters|'''New account request process for Euler and Leonhard Open''']]
  
14.04.2020
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14.01.2021
  
The next major expansion of the Euler cluster — Euler VII — will be based on the same kind of compute nodes as Euler VI
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We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. [[New account request process for HPC clusters|Read more...]]
[[Upcoming Euler VII expansion|Read more...]]
 
 
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[[Jupyter on Euler and Leonhard Open|'''Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open''']]
 
[[Jupyter on Euler and Leonhard Open|'''Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open''']]

Revision as of 13:47, 18 August 2021

Welcome to ETH Scientific and High Performance Computing Wiki

NvidiaDGX1 cropped1.jpg

Quick guide

Helpers and support

FAQ

News

</td> <td style="width: 22%; background: white;"> COVID-19 — Cluster operation during state of emergency at ETH 17.03.2020 As announced by President Joël Mesot in the evening of March 16 (see email), ETH will be operating in a state of emergency starting today. Most employees are required to work from home. Read more... </td> <td style="width: 2%; background: white;"> </td> <td style="width: 22%; background: white;"> Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open 27.09.2019 Since Jupyter notebooks are becoming more widely used among the scientific community, the HPC group developed a script that you can run on your local computer. This shell script then starts a Jupyter notebook in a batch job on Euler/Leonhard Open (depending on which cluster you choose) and connects your local browser with it. Read more... </td> </table>

Most recent software installations

Twenty most recent software installation on each cluster. The list is based on the last modification time of the module files.

Script to set a permanent default for software stack initialized on Euler upon login

20 Apr 2021

On Euler, you can now set the new software stack as a permanent default upon login Read more...

New account request process for Euler and Leonhard Open

14.01.2021

We are introducing a new automated process for obtaining an account for the HPC clusters of ETH, starting with Leonhard Open and later we also implement the same process on Euler. Read more...

Euler (new software stack,see complete list): Leonhard Open (see complete list):
onnx/1.12.0 (gcc 8.2.0)
onnx/1.12.0 (gcc 6.3.0)
onnx/1.12.0 (gcc 4.8.5)
protobuf/3.19.1 (gcc 8.2.0)
protobuf/3.19.1 (gcc 6.3.0)
protobuf/3.19.1 (gcc 4.8.5)
libtiff/4.3.0 (intel 19.1.0)
libtiff/4.3.0 (gcc 8.2.0)
libtiff/4.3.0 (gcc 6.3.0)
libtiff/4.3.0 (gcc 4.8.5)
eth_proxy.lua/ (Core)
nlohmann-json/3.11.2 (gcc 8.2.0)
nlohmann-json/3.11.2 (gcc 6.3.0)
nlohmann-json/3.11.2 (gcc 4.8.5)
xpdf/4.02 (gcc 8.2.0)
cups/2.2.3 (gcc 8.2.0)
matlab/R2022a (Core)
spaceranger/2.0.0 (Core)
rosetta/3.13 (gcc 8.2.0, openmpi 4.1.4)
nextflow/22.04.4 (gcc 8.2.0)

trimgalore/0.6.6 (gcc 4.8.5)
multiqc/1.11 (gcc 4.8.5)
cutadapt/3.4 (gcc 4.8.5)
bismark/0.23.0 (gcc 4.8.5)
r/4.1.0 (gcc 8.2.0)
r/4.1.0 (gcc 6.3.0)
r/4.1.0 (gcc 4.8.5)
fastq-screen/0.14.1 (gcc 6.3.0)
fastq-screen/0.14.1 (gcc 4.8.5)
bismark/0.23.0 (intel 18.0.1)
bismark/0.23.0 (gcc 8.2.0)
bismark/0.23.0 (gcc 6.3.0)
trimgalore/0.6.6 (intel 18.0.1)
trimgalore/0.6.6 (gcc 8.2.0)
trimgalore/0.6.6 (gcc 6.3.0)
fastqc/0.11.9 (intel 18.0.1)
fastqc/0.11.9 (gcc 8.2.0)
fastqc/0.11.9 (gcc 6.3.0)
fastqc/0.11.9 (gcc 4.8.5)
bowtie2/2.4.4 (intel 18.0.1)