Difference between revisions of "Sandbox User documentation"

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* [[Tutorials/Sandbox/Accessing the clusters|Accessing the clusters]]
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__NOTOC__
* [[Tutorials/Sandbox/Run your calculations|Run your calculations]]
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== Getting started with clusters ==
* [[Tutorials/Sandbox/Storage and data transfer|Storage and data transfer]]
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<table style="width: 100%;">
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<tr valign=top>
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<td style="width: 30%; background: white; text-align: center;">
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[[File:Transferdata.png|250px]]
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</td>
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<td style="width: 40%; background: white; text-align: left;>
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<div style="width: 60%; background: #BFE5D9; height: 35px; border-radius: 10px; padding: 5px; margin:5px">
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Sandbox Accessing the clusters| 1. Accessing the clusters]]
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</div>
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<div style="width: 60%; background: #BFE5D9; height: 35px; border-radius: 10px; padding: 5px; margin:5px">
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Storage and data transfer|2. Storage and data transfer]]
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</div>
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<div style="width: 60%; background: #BFE5D9; height: 35px; border-radius: 10px; padding: 5px; margin:5px">
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Modules and applications | 3. Modules and applications]]
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</div>
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<div style="width: 60%; background: #BFE5D9; height: 35px; border-radius: 10px; padding: 5px; margin:5px">
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[Job management with LSF| 4. Job management with LSF ]]
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</div>
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<div style="width: 60%; background: #BFE5D9; height: 35px; border-radius: 10px; padding: 5px; margin:5px">
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[[running applications|5. Tutorials]]
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</div>
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</td>
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<td style="width: 20%; background: white; text-align: center;">
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</td>
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</tr>
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</table>
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== User guide ==
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<table style="width: 90%">
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<tr valign=top>
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<td style="width: 33%; background: white;">
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=== Cookbook ===
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* [[Accessing the clusters]]
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* [[Data management]]
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* [[Setting up your environment]]
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* [[Using the batch system]]
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* [[Applications]]
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</td>
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<td style="width: 33%; background: white;">
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=== Parallel computing ===
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* [[Parallel_computing|Parallel computing]]
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* [[Hybrid_jobs|Hybrid (MPI+OpenMP) jobs]]
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* [[GNU Parallel]]
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* [[Node allocation for parallel jobs]]
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</td>
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<td style="width: 33%; background: white;">
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=== GPUs ===
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* [[Getting started with GPUs]]
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</td>
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</tr>
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</table>
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<table style="width: 90%">
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<tr valign=top>
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<td style="width: 33%; background: white;">
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=== New to Linux ===
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* [[Linux_command_line|Bash and Linux commands]]
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* [[Linux_permissions|Linux permissions]]
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</td>
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<td style="width: 33%; background: white;">
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=== Software development ===
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* [[Compiling_an_application|Compiling an application]]
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* [[Profiling_your_binary|Profiling your binary]]
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* [[Debugging_your_code|Debugging your code]]
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</td>
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<td style="width: 33%; background: white;">
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=== For software maintainers ===
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* [[Setting_up_a_software_stack_for_research_group|Setting up a software stack for a research group]]
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* [[Creating_local_module_directory|Creating a local module directory]]
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* [[Unpacking_RPM_packages|Unpacking RPM packages in users space]]
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</td>
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</tr>
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</table>
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<table style="width: 90%">
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<tr valign=top>
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<td style="width: 33%; background: white;">
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</td>
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<td style="width: 33%; background: white;">
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=== CLC genomics service ===
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* [[Using_the_CLC_genomics_service|Using the CLC genomics service]]
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* [[NCBI_BLAST_databases|NCBI BLAST Databases]]
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* [[Reference_genomes|Reference genomes]]
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</td>
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<td style="width: 33%; background: white;">
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=== For IT Support Groups (ISG) ===
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* [[Managing_ETH_groups|Setting up a custom ETH group for a cluster shareholder]]
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* [[Exporting an NFS file system to Euler]]
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* [[Cluster IP ranges]]
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</td>
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</tr>
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</table>

Latest revision as of 09:39, 29 January 2021

Getting started with clusters

250px

     5. Tutorials

User guide

Cookbook

Parallel computing

GPUs

New to Linux

Software development

For software maintainers

CLC genomics service

For IT Support Groups (ISG)