Difference between revisions of "Submit a Singularity job"
From ScientificComputing
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__NOTOC__ | __NOTOC__ | ||
| + | {{back_to_tutorials}} | ||
| + | == Download the container image == | ||
| + | Please see [[Deploy a container using Singularity]] for how to create the example container image ubuntu-python3 | ||
$ singularity pull docker://dockeruser/ubuntu-python3 | $ singularity pull docker://dockeruser/ubuntu-python3 | ||
$ ls | $ ls | ||
ubuntu-python3_latest.sif | ubuntu-python3_latest.sif | ||
| + | |||
| + | == Create a job script == | ||
| + | Create a file called ''job_script.bsub'' and add | ||
| + | #!/usr/bin/bash | ||
| + | #BSUB -n 1 | ||
| + | #BSUB -R singularity | ||
| + | #BSUB -R "rusage[mem=2048]" | ||
| + | #BSUB -W 1:00 | ||
| − | + | singularity run ubuntu-python3_latest.sif python3 -c "import tensorflow as tf; print(tf.__version__)" | |
| − | + | ||
| − | + | Submit the job script | |
| − | 2.5.0 | + | $ bsub < job_script.bsub |
| + | |||
| + | When the job has finished, you can see the output in the output file lsf.o* | ||
| + | 2.5.0 | ||
| + | |||
| + | {{back_to_tutorials}} | ||
Latest revision as of 07:49, 12 October 2021
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< Examples |
Download the container image
Please see Deploy a container using Singularity for how to create the example container image ubuntu-python3
$ singularity pull docker://dockeruser/ubuntu-python3 $ ls ubuntu-python3_latest.sif
Create a job script
Create a file called job_script.bsub and add
#!/usr/bin/bash #BSUB -n 1 #BSUB -R singularity #BSUB -R "rusage[mem=2048]" #BSUB -W 1:00 singularity run ubuntu-python3_latest.sif python3 -c "import tensorflow as tf; print(tf.__version__)"
Submit the job script
$ bsub < job_script.bsub
When the job has finished, you can see the output in the output file lsf.o*
2.5.0
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< Examples |
