Subread/Batch

From ScientificComputing
Revision as of 14:26, 21 December 2016 by Sfux (talk | contribs) (Created page with "You can submit a subread job in batch mode with the following command: bsub [LSF options] "[executable] [options]" where you need to replace ''[LSF options]'' with LSF para...")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

You can submit a subread job in batch mode with the following command:

bsub [LSF options] "[executable] [options]"

where you need to replace [LSF options] with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the batch system.

Here [executable] is one of the following executables:

exactSNP, featureCounts, subindel, subjunc, subread-align, subread-buildindex

and [options] needs to be replaced by subread command line options.