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You can submit a subread job in batch mode with the following command:

sbatch [Slurm options] --wrap="[executable] [options]"

Here you need to replace [Slurm options] with Slurm parameters for the resource requirements of the job. Please find a documentation about the parameters of sbatch on the wiki page about the batch system.

Here [executable] is one of the following executables:

exactSNP, featureCounts, subindel, subjunc, subread-align, subread-buildindex

and [options] needs to be replaced by subread command line options.