AlphaFold2 Workshop 17 January 2024

Introduction

The workshop took place on the ETH Zentrum Campus on the 17th of January 2024. Here we aim to share the slides presented during the event. Some of the work presented wa still unpublished, therefore not all slides are available.

Note: this page has been previously erased due to an error : we are currently in the process of reconstructing it and re-link all of the slides to this page

Program

09:00 - 09:15 Welcome and introduction

Scientific morning session

09:15 - 10:00 AlphaLink: Integrating experimental distance restraints in AlphaFold2 structure prediction

Dr. Andrea Graziadei (Human Technopole, Milan)

10:00 - 10:45 Using AlphaFold2 to study the consequences of human genetics and the evolution of the protein universe

Prof. Pedro Beltrao (Department of Biology, ETH Zurich)

11:00 - 11:45 Using AlphaFold2 to predict protein complexes: What worked and what did not

Prof. Stephanie Jonas (Department of Biology, ETH Zurich)

Lunch break

Technical afternoon session

13:30 - 14:15 Understanding the AlphaFold2 workflow and its output, Dr. Simon Rüdisser (Department of Biology, ETH Zurich)

14:15 - 15:00 Hands-on session with the AlphaFold2 Jupyter notebook on JupyterHub and the demonstration of the submission of AlphaFold2 jobs on the command line

15:15 - 16:00 AlphaFold2 on Euler: Best practices, Dr. Nadejda Marounina (Scientific IT Services, ETH Zurich)