Euler applications

The currently available modules on Euler are presented in the following table, with the following typographic convention:

• Bold version numbers are the current default
• Italic supported version numbers will be moved to legacy
• Italic new versions will be moved to supported
• Crossed-out versions will be removed
• Underlined versions will be the new defaults

Application	Category	Module name	Legacy versions	Supported versions	New versions	Notes
Abaqus	FEA	abaqus	6.11	6.13-2‌6.14-1	2016
Abinit	Chemistry	abinit		7.10.5
ADF	Chemistry	adf	2012.01‌2013.01	2014.07	2016.107
AFNI	Bioinformatics	afni			16.2.09
AGI Photoscan	Visualization	agi_photoscan			1.3.4
ALPS	Physics	alps			2.2b4-r7651
Amber	Chemistry	amber		12
AMDIS	Chemistry	amdis	3197	3247
ANSYS	Simulation	ansys	14.5‌15.0	16.2‌17.0	18.0‌18.2
Apache Ant	Development	ant		1.9.4
ants	Image Processing	ants		2.1.0
Auto	Mathematics	auto07p		0.9.1
autoconf	Development	autoconf		2.69
automake	Development	automake		1.15
Bazel	Development	bazel		0.2.3‌0.3.0	0.4.4
GNU Binutils	Development	binutils		2.25		Needed to build AVX2 executables.
Biocondutor R	Bioinformatics	bioconductor		3.0‌3.4‌3.6
NCBI BLAST++	Bioinformatics	blast		2.2.30
Boost	Library	boost	1.55.0‌1.59.0_pyucs4	1.57.0‌1.59.0	1.59.0_py2.7.9‌1.62.0
Bowtie	Bioinformatics	bowtie		1.1.1
Bowtie2	Bioinformatics	bowtie2		2.2.3
bzip2	Compression	bzip2		1.0.6
Cantera	Chemistry	cantera		2.1.2‌2.3.0
canu	Bioinformatics	canu			1.2
Climate Data Operators (CDO)	Climate	cdo		1.6.4
Cellprofiler	Biology	cellprofiler			2.2
CentOS Compatibility Libraries	System	centos_cruft	6
ANSYS CFX	CFD	cfx	14.5‌15.0	16.2‌17.0	18.0‌18.2
CGAL	Mathematics	cgal			4.10
CHARMM	Chemistry	charmm		c39b1		Only for licenced users.
climate		climate		1.0‌1.0~
CMake	Development	cmake		2.8.12‌3.3.1‌3.5.2	3.9.2
COMSOL Multiphysics	Physics	comsol	4.4‌5.0‌5.1	5.2‌5.2.0.200‌5.2a‌5.3	5.3a
CP2K	Chemistry	cp2k		2.5.14075‌3.0	2.4.13377‌3.0_libxc‌3.0_noelpa‌3.0_plumed‌4.1‌trunk.2.5.13191
CST Microwave Studio	Physics	cst_microwave			2017
CuffLinks		cufflinks		2.1.1‌2.2.1
curl	Library	curl		7.49.1
Cyana	Chemistry	cyana		3.97‌3.98
Dalton	Chemistry	dalton			2016.1‌2016.1_64
DEAL-II	Library	dealii	8.2.1	8.3.0	8.5.0
DIRAC	Chemistry	dirac		14
Eigen	Library	eigen		3.2.1
ELPA	Library	elpa		2015.11.001	2016.05.004
express	Bioinformatics	express		1.5.1
FALCON	Bioinformatics	falcon			0.5.0
FDTD Solutions	Physics	fdtd	8.5.3	8.11‌8.15
FEniCS	Mathematics	fenics			1.6.0
FFmpeg	Visualization	ffmpeg	1.0.1	2.3.3
FFTW	Library	fftw	2.1.5‌2.1.5_both‌2.1.5_sp‌2.1.5_sp_both	3.3.3	3.3.4
fftw_ld	Library	fftw_ld		3.3.3	3.3.4
fftw_sp	Library	fftw_sp		3.3.3	3.3.4
fix		fix			1.06
ANSYS FLUENT	CFD	fluent	14.5‌15.0	16.2‌17.0	18.0‌18.2
OpenFOAM Extend	Fluid Dynamics	foam_ext		3.1
FreeFem++	Library	freefem		3.34
freesurfer	visualization	freesurfer			6.0.0
FSL	Library	fsl		5.0.7	5.0.9
ga	library	ga		5.6.2
GAMESS US	Chemistry	gamess		2014_R1‌2014_R1_ser	2013_BLW‌2014_XMVB
GAMS	Chemistry	gams			24.5‌24.8
GATK	Bioinformatics	gatk		3.4.46‌3.5‌3.7‌3.8
Gaussian	Chemistry	gaussian		09d1		Access upon request.
GNU GCC	Development	gcc	4.7.4	4.4.7‌4.8.2‌4.9.2	4.8.4‌5.2.0‌6.2.0‌6.3.0
gdb	Development	gdb		7.12
git	Development	git		1.9.0‌2.11.0
GLPK	Mathematics	glpk			4.60
GMP	Library	gmp		5.1.3	6.0.0a‌6.1.0_cxx‌6.1.2
Gmsh	FEM	gmsh		2.12
GMT	Visualization	gmt		5.3.1
GNU parallel	Development	gnu_parallel			20140622
Gradle	Development	gradle			3.1
Graphviz	Visualization	graphviz		2.38
Gromacs	Chemistry	gromacs	4.5.7_plumed‌4.6.7	5.0.2	5.0.2_plumed
GSL	Library	gsl		1.14‌1.16
Gurobi	Mathematics	gurobi		6.0.2‌6.5.1‌7.0.2	c6.0.2
gUSE	Development	guse			20150319
HDF5	Library	hdf5		1.8.12	1.8.13
hwloc	System	hwloc		1.11.0
HYPRE	library	hypre		2.10.0b
ANSYS ICEMCFD	CFD	icemcfd	14.5‌15.0	16.2‌17.0	18.0‌18.2
Intel MPI Library	MPI	impi			2017.0.0.098‌2017.0.098‌2017.4.239‌2018.0‌2018.1.163‌5.0.1‌5.1.1‌5.1.3
IMSB tools	Bioinformatics	imsbtools			20150319‌20150319_swath‌20150319-test
IMSL Numerical Libraries	Library	imsl			7.1
Intel Composer	Development	intel		14.0.1‌15.0.0‌16.0.0	16.0.2.181‌17.0.0.098‌2017.0.098‌2017.5‌2018.0‌2018.1
intel_tools		intel_tools			2017.5‌2018.0
Interconnect	System	interconnect		ethernet‌infiniband
Java	Development	java	1.6.0_31	1.7.0_51‌1.8.0_31‌1.8.0_91
Julia	Development	julia		0.6.2	0.5.0_dev
Jython	Development	jython		2.7.0
LAMMPS	Chemistry	lammps		2015-08-10	2015-05-15‌2016-02-16‌2016-02-16_python‌2016-05-14
Libint	Library	libint		1.1.5
libsvm		libsvm		3.2.2
libxc	Chemistry	libxc			2.2.3‌3.0.0
LIBXSMM	Library	libxsmm		1.4.1
LifeV	FEM	lifev			3.8.8
LLVM	Development	llvm			3.6.0‌4.0.1
LSF DRMAA	Library	lsf_drmaa		1.0.4‌1.1.1
Maple	Mathematics	maple		17	2016
mapper	Bioinformatics	mapper			1.0	bfast
MSC Marc	FEA	marc		2013.1	2015
Mathematica	Mathematics	mathematica	9.0.1	10.0.2‌10.2.0‌11.1.1
MATLAB	Numerical	matlab		8.2‌8.5‌R2017b	8.4‌8.6‌8.7‌9.1
Apache Maven	Development	maven		3.2.3
Ansys electronics desktop	Physics	maxwell			17.0
Maxwell Render	Visualization	maxwellrender			3.2
METIS	Library	metis			5.1.0‌5.1.0_32‌5.1.0_64
MKL	Library	mkl		14.0.1	2017.5‌2018.0‌2018.1
molcas	chemistry	molcas		18.0.o180122-0800
molden	Visualization	molden			5.6
Molpro	Chemistry	molpro	2010.1	2012.1_ser‌2015.1‌2015.1.18
Mono .NET framework	Development	mono			3.12.0
MPFR	library	mpfr		3.1.2	3.1.2_gmp6
MrTrx3	Library	mrtrix3		0.2.11	vz‌vz2
MUMPS	Library	mumps			5.0.1‌5.0.1_metis32‌5.0.1_metis64
MVAPICH2	MPI	mvapich2	1.8.1‌2.0b‌2.0rc1‌2.0rc2	2.1	2.0.1‌2.2‌2.2a‌2.3rc1
MyriMatch	Biology	myrimatch		2.2.8634
NAMD	Chemistry	namd		2.10	2.10_test
NBO	Chemistry	nbo		5.9‌6.0
NCO	Library	nco		4.4.8
Ncview	Visualization	ncview		2.1.2
netCDF	Library	netcdf		4.3.1	4.3.2	Include support for netCDF4/HDF5 parallel I/O.
node.js	Development	node		5.1.1
ntl	Numerics	ntl			9.8.1
Nwchem	Chemistry	nwchem		6.6
NX Nastran		nxnastran			11
octave	Mathematics	octave			4.2.1
OMSSA	Biology	omssa		2.1.9
OpenBabel	Chemistry	openbabel		2.4.1
OpenBLAS	Library	openblas		0.2.13_par‌0.2.13_seq‌0.2.8_par‌0.2.8_seq
OpenCV	Computer Vision	opencv			3.1
OpenFOAM	CFD	openfoam	2.3.0	2.4.0	4.1
OpenMesh	Mathematics	openmesh			6.0
Open MPI	MPI	open_mpi	1.4.5	1.6.5	1.10.0‌1.10.2‌1.10.3‌1.8.0‌2.0.0‌2.0.2‌2.1.1‌2.1.2‌3.0.0
OpenMS	Chemistry	openms		1.10.0‌2.0.0-memory‌2.1.0	1.10.0‌2.0.0-memory
ORCA	Chemistry	orca		3.0.1‌3.0.3	4.0.0‌4.0.0.2‌4.0.1
OpenSHMEM over MPI-3	Development	oshmpi			2014-08-20
PAPI	Development	papi			5.4.1
Intel Parallel Studio XE Cluster Edition	Development	parallel_studio_xe			2015‌2016‌2016.2‌2017.0‌2017.5‌2018.0‌2018.1
ParaView	Visualization	paraview		4.1.0
ParMETIS	Library	parmetis			4.0.3‌4.0.3_32‌4.0.3_64
PCRE	Regular expression	pcre		8.38
Perl	Development	perl			5.16.3‌5.24.1
PETSc	Library	petsc			3.4.5‌3.5.3_metis64‌3.5.3_par‌3.6.3‌3.6.3_metis32‌3.6.3_metis64‌3.7.5_metis32
PGI Compiler	Development	pgi			14.1‌15.1
phylo	Bioinformatics	phylo		1.0		BEAGLE, BEAST, muscle, PhyML
pigz	Compression	pigz		2.3.4
PLUMED	Chemistry	plumed		2.1.0	2.3.2
Parallel netCDF	Library	pnetcdf			1.3.1
PSI4	Chemistry	psi4		1.1a1_p1	1.0rc‌1.1a1
ProteoWizard	Proteomics	pwiz		2.2.3239‌3.0.10051
pyFerret	Library	pyferret		1.0.2
PyMOL	Visualization	pymol		1.7.4‌1.8.4
Python	Development	python		2.7.12‌2.7.13‌2.7.6‌2.7.9‌3.3.3‌3.4.3‌3.6.0	2.7.14‌2.7.6_UCS4‌3.6.1
qbox	MD	qbox			1.63.7
Q-Chem	Chemistry	qchem			4.3_SMP
QGIS	Development	qgis			2.16.2
Qt	Development	qt		4.8.4	5.5.0
Quantum Espresso	Chemistry	quantum_espresso	4.0.3	5.1‌5.3‌6.0‌6.1
R Project	Numerical	r		3.0.2‌3.1.2‌3.2.2	3.3.0‌3.4.0
RAxML	bioinformatics	raxml		8.2.4
RELION	Bioinformatics	relion			1.3‌2.0.3‌2.1.b1
Rosetta	Bioinformatics	rosetta			3.6‌3.8
Revolution R Enterprise	Mathematics	rre	7	7.3‌7.4
RStudio	Development	rstudio			0.99.669
Saint	Bioinformatics	saint		0.0.4_q‌2.3.4_full‌2.5.0_full‌3.1.0_express‌3.6.1_express
SAMtools	Bioinformatics	samtools		1.1‌1.2
ScaLAPACK	Library	scalapack		2.0.2
SPHIRE		sphire			20170602
SPRNG	Numerics	sprng			5.0
SQLite	Development	sqlite			3.1.4‌3.15.0
ssh_wrapper		ssh_wrapper		blaunch
STAR	Bioinformatics	star		2.4.2a‌2.5.3a
Stata	Mathematics	stata		13‌14
Subread	Bioinformatics	subread		1.5.0
SuiteSparse	Library	suitesparse			4.4.4‌4.4.4_32‌4.4.4_64
SuperLU_DIST	Mathematics	superlu_dist			5.1.3_32
SVN		svn		1.9.5
SWIG	Development	swig		3.0.12‌3.0.5
SWMM	Physics	swmm			5.1.010
SZIP	Library	szip		2.1
X!Tandem	Proteomics	tandem		2015.12.15
TeX Live	Typesetting	texlive		2009
TMUX	System	tmux		2.5
TopHat	Bioinformatics	tophat		2.0.13
tpp	Bioninformatics	tpp			4.7.0‌5.0.0‌search_engines
TransAT	CFD	transat			5.2.3
Trilinos	Library	trilinos			12.2.1
Turbomole	Chemistry	turbomole		6.4.0‌6.4.0_mpi‌6.4.0_smp	7.0.2‌7.0.2_smp‌7.2.0‌7.2.0_smp
UDUNITS	Library	udunits		2.2.18	2.1.24
Valgrind	Profiling	valgrind			3.11.0
VASP	Chemistry	vasp		5.3‌5.3_Gamma‌5.3_Gamma_intel_fix‌5.3_intel_fix‌5.3_O1‌5.3_SOC‌5.3_VTST‌5.3_VTST_Gamma_intel_fix‌5.3_VTST_intel_fix‌5.4.4‌5.4.4_Gamma		Only for license holders.
vcp	Bioinformatics	vcp		1.0‌1.1		check components: module help vcp
VisIt	Visualization	visit	2.8.0	2.8.2‌2.9.0	2.12.3
VMD	Visualization	vmd		1.9.2
VTK	Visualization	vtk		6.1.0
wxWidgets	Development	wxwidgets		2.8.12‌3.0.2
Xerces	Bioinformatics	xerces			3.1.1
Xmgrace	Visualization	xmgrace		5.1.24
Xpdf	Visualization	xpdf		3.03
xquest	Bioninformatics	xquest		2.1.5
xz	Compression	xz		5.2.2
zlib	Compression	zlib		1.2.8