Euler applications and libraries

Introduction

On Euler cluster, we plan to switch to LMOD modules, which provide some additional features compared to environment modules that we are currently using on Euler. LMOD allows to define a hierarchy of modules containing 3 layers (Core, Compiler, MPI). Therefore we present the list of available applications and libraries in a different way that takes into account the 3 layers of the module hierarchy.

For Python packages, we don't create LMOD modules. For a list of all available Python packages, please check the following wiki page.

Module hierarchy

Core layer

The core layer contains all module files which are not depending on any compiler/MPI. This can for instance be compilers, utility modules (eth_proxy, StdEnv) or commercial codes that bring their own runtime libraries to be independent of the compilers available on the system.

StdEnv
adf/2016.07
adf/2019.302
ansys/18.2
ansys/19.5
ansys_em/19.5_swissloop
ansys_em/19.5
ansys_em/20.2.4_swissloop
ansys_em/20.2.4
blender/2.79b
blender/2.80
cellranger/3.1.0
cellranger/4.0.0
cfx/18.2
cfx/19.5
climate/3.0
comsol/5.3a
comsol/5.4
comsol/5.5
comsol/5.6
cst_studio_suite/2020
eth_proxy
fiji/2.1.0
fluent/18.2
fluent/19.5
freesurfer/6.0.0
gama/1.8
gcc/4.8.2
gcc/4.8.5
gcc/5.4.0
gcc/6.3.0
gcc/7.3.0
gcc/8.2.0
gurobi/9.0.2
gurobi/9.1.1
icemcfd/18.2
icemcfd/19.5
imagej/1.53
intel/18.0.1
intel/19.1.0
intel/2018.1
intel/2020.0
intel_tools/18.0.1
intel_tools/2018.1
maple/2016
maple/2019.1
mathematica/11.1.1
matlab/R2017b
matlab/R2020a
matlab/9.3
orca/4.2.1
paraview/5.6.0
paraview/5.8.0_headless
paraview/5.8.0
pgi/15.1
stata/14
stata/16
turbomole/7.0.2_smp
turbomole/7.0.2
turbomole/7.4.1_smp
turbomole/7.4.1
vmd/1.9.3

Compiler layer

The compiler layer contains all modules which are depending on a particular compilers, but not on any MPI library. The standard compiler for the new software stack on Euler is GCC 4.8.5, therefore most applications and libraries are available for this compiler. There are additional toolchains for GCC 6.3.0 (supports c++14 standard), GCC 8.2.0 (supports c++17 standard) and for Intel 18.0.1.

GCC 4.8.5

abseil-cpp/20190808
ack/2.22
alglib/3.11.0
alsa-lib/1.1.4.1
angsd/0.921
angsd/0.925
ann/1.1.2
ant/1.9.9
antlr/2.7.7
apr-util/1.5.4
apr-util/1.6.0
apr/1.5.2
apr/1.6.2
aragorn/1.2.38
arb/2.17.0
argtable/2-13
aspell/0.60.6.1
astral/4.10.7
astyle/3.0.1
atk/2.20.0
atk/2.21.90
atlas/3.10.2
atompaw/4.0.0.13
atop/2.2-3
autoconf/2.69
automake/1.15
automake/1.15.1
automake/1.16.2
bam-readcount/0.8.0
bamtools/2.5.1
bamutil/1.0.13
bash-completion/2.7
bash/4.4
bash/4.4.12
bazel/0.9.0
bazel/0.11.1
bazel/0.24.1
bbmap/37.36
bc/1.07
bcftools/1.6
bcl2fastq/2.20.422
bdw-gc/7.4.4
bdw-gc/7.6.0
beagle/3.3.2
beagle/4.1
beagle/5.1
beast1/1.8.4
beast2/2.4.6
beast2/2.5.2
bedops/2.4.36
bedtools2/2.26.0
bedtools2/2.27.1
bedtools2/2.29.2
berkeley-db/5.3.28
berkeley-db/6.2.32
binutils/2.28
binutils/2.29.1
bismark/0.19.0
bison/3.0.4
bison/3.4.2
bitmap/1.0.8
blast-plus/2.9.0
blat/35
blat/36
blaze/3.1
blaze/3.2
bliss/0.73
blitz/1.0.1
boost/1.62.0
boost/1.63.0
boost/1.64.0
boost/1.66.0
boost/1.68.0
boost/1.69.0
boost/1.73.0
bowtie/1.2
bowtie2/2.3.4.1
bowtie2/2.3.5.1
bpp-core/2.2.0
bpp-phyl/2.2.0
bpp-seq/2.2.0
bpp-suite/2.2.0
breseq/0.30.1
bwa/0.7.12
bwa/0.7.15
bwa/0.7.17
bzip2/1.0.6
bzip2/1.0.8
c-blosc/1.12.1
cairo/1.14.8
cairo/1.14.10
cairo/1.14.12
canu/1.9
cap3/2015-02-11
cares/1.13.0
cdbfasta/2017-03-16
cddlib/0.94h
cdhit/4.6.8
cereal/1.2.2
cgal/4.11
checkm/1.1.2
clhep/2.4.1.3
cloc/1.74
clustalo/1.2.4
clustalw/2.1
cmake/2.8.10.2
cmake/3.4.3
cmake/3.5.2
cmake/3.8.0
cmake/3.9.0
cmake/3.9.4
cmake/3.11.0
cmake/3.11.1
cmake/3.12.4
cmake/3.14.4
cmake/3.15.3
cmake/3.16.5
cmocka/1.1.1
colm/0.12.0
compositeproto/0.4.2
connectome_workbench/1.3.2
coreutils/8.26
cppad/20170000.8
cppcheck/1.81
cppunit/1.13.2
crisprcasfinder/4.2.20
cscope/15.8b
cub/1.7.1
cube/4.3.5
cuda/8.0.61
cuda/9.0.176
cuda/9.1.85
cuda/9.2.88
cuda/10.0.130
cuda/10.1.243
cuda/11.0.3
cudnn/5.1
cudnn/6.0
cudnn/7.0
cudnn/7.2
cudnn/7.3
cudnn/7.4
cudnn/7.5
cudnn/7.6.4
cudnn/8.0.5
cufflinks/2.2.1
cups/2.2.3
curl/7.53.1
curl/7.59.0
curl/7.61.1
curl/7.72.0
cvs/1.12.13
czmq/4.0.2
damageproto/1.2.1
dante/1.4.2
datamash/1.1.0
dbus/1.11.2
dbus/1.12.10
diamond/0.9.14
diamond/0.9.22
diamond/0.9.24
diamond/0.9.28
diamond/2.0.6
direnv/2.11.3
dmd/2.081.1
dmlc-core/20170508
dmxproto/2.3.1
dos2unix/7.3.4
double-conversion/2.0.1
dri2proto/2.8
dri3proto/1.0
dropest/0.8.6
ea-utils/1.04.807
ed/1.4
eigen/3.3.4
elfutils/0.163
emacs/26.1
emboss/6.6.0
energyplus/8.2.0
energyplus/8.5.0
exonerate/2.4.0
expat/2.2.0
expat/2.2.2
expat/2.2.9
exuberant-ctags/5.8
farmhash/92e897
fastq-screen/0.11.2
fastqc/0.11.4
fastqc/0.11.5
fastqc/0.11.9
fastx-toolkit/0.0.14
ffmpeg/3.2.4
ffmpeg/3.2.14
fftw/3.3.5
findutils/4.6.0
fixesproto/5.0
flac/1.3.2
flash/1.2.11
flatbuffers/1.12.0
flex/2.6.1
flex/2.6.3
flex/2.6.4
flint/2.5.2
fltk/1.3.3
fluidsynth/1.1.10
font-util/1.3.1
fontcacheproto/0.1.3
fontconfig/2.11.1
fontconfig/2.12.3
fontsproto/2.1.3
fonttosfnt/1.0.4
freetype/2.7
freetype/2.7.1
freexl/1.0.5
gatk/4.0.4.0
gatk/4.0.10.0
gatk/4.1.1.0
gaussian/09d01
gawk/4.1.4
gdal/3.1.2
gdbm/1.13
gdbm/1.14.1
gdbm/1.18.1
gdk-pixbuf/2.31.2
gdk-pixbuf/2.31.3
gdk-pixbuf/2.31.4
gdk-pixbuf/2.31.6
gemmlowp/a6f29d9ac
geos/3.6.2
gettext/0.19.8.1
gflags/2.1.2
ghostscript-fonts/8.11
ghostscript/9.21
giflib/5.1.4
git-lfs/2.3.0
git/2.12.1
git/2.15.1
glew/2.0.0
glib/2.49.7
glib/2.50.3
glib/2.53.1
glib/2.56.0
glib/2.56.1
glm/0.9.7.1
global/6.5
glog/0.3.4
glog/0.3.5
glpk/4.55
glpk/4.61
glpk/4.65
glproto/1.4.17
gmake/4.0
gmake/4.2.1
gmp/6.1.2
gnat/2016
gnuplot/5.2.0
gnutls/3.5.10
gnutls/3.5.13
go-bootstrap/1.4-bootstrap-20161024
go-bootstrap/1.4-bootstrap-20171003
go/1.8.1
go/1.10.1
go/1.11.1
gobject-introspection/1.49.1
gobject-introspection/1.49.2
gobject-introspection/1.50.0
googletest/1.8.1
gperf/3.0.4
gperftools/2.4
graphtyper/1.3
groff/1.22.3
gsl/1.16
gsl/2.3
gsl/2.4
gtkplus/2.24.32
gts/121130
guile/2.2.0
harfbuzz/1.4.5
harfbuzz/1.4.6
harfbuzz/1.4.7
harfbuzz/1.4.8
harminv/1.4
hdf/4.2.12
hdf/4.2.13
hdf5/1.10.1
help2man/1.47.4
highfive/1.5
highwayhash/dfcb97
hisat2/2.1.0
htop/2.0.2
htslib/1.2
htslib/1.3.1
htslib/1.6
htslib/1.7
htslib/1.10.2
hwloc/1.11.6
hwloc/1.11.8
hwloc/1.11.9
hwloc/1.11.10
hwloc/1.11.12
hwloc/2.0.1
hwloc/2.2.0
hydra/3.3.1
hypre/2.13.0
icu4c/58.2
icu4c/60.1
id3lib/3.8.3
idba/1.1.3
igv/2.8.2
ilmbase/2.3.0
image-magick/7.0.5-9
imake/1.0.7
inputproto/2.3.2
intel-tbb/2017.5
intel-tbb/2018.2
intltool/0.51.0
isl/0.14
isl/0.15
isl/0.18
isl/0.19
jags/4.3.0
jansson/2.9
jasper/1.900.1
jdk/8u141-b15
jemalloc/4.5.0
jmol/14.8.0
jq/1.5
json-c/0.13.1
jsoncpp/1.7.3
judy/1.0.5
kbproto/1.0.7
krb5/1.16.1
lcms/2.8
leveldb/1.20
lftp/4.8.1
libaio/0.3.110
libarchive/3.2.1
libarchive/3.3.2
libassuan/2.4.5
libatomic-ops/7.4.4
libbsd/0.8.6
libbsd/0.10.0
libcerf/1.3
libcheck/0.12.0
libctl/3.2.2
libdrm/2.4.70
libdrm/2.4.81
libdwarf/20160507
libedit/3.1-20170329
libelf/0.8.13
libevent/2.0.19
libevent/2.0.21
libfabric/1.8.0
libffi/3.2.1
libfontenc/1.1.3
libfs/1.0.7
libgcrypt/1.6.2
libgcrypt/1.8.1
libgd/2.2.4
libgeotiff/1.5.1
libgme/0.6.2
libgpg-error/1.21
libgpg-error/1.27
libgpuarray/0.7.5
libgtextutils/0.7
libice/1.0.9
libiconv/1.15
libiconv/1.16
libidn2/2.0.5
libidn2/2.1.1
libint/2.2.0
libjpeg-turbo/1.5.0
libjpeg-turbo/1.5.3
libjpeg/9b
libjpeg/9c
libmng/2.0.2
libmng/2.0.3
libnl/3.3.0
libogg/1.3.2
libopenal/1.17.2
libopenal/1.18.2
libpcap/1.8.1
libpciaccess/0.13.4
libpciaccess/0.13.5
libpipeline/1.4.2
libpng/1.6.27
libpng/1.6.34
libpthread-stubs/0.3
libpthread-stubs/0.4
librdf/1.0.17
libsigsegv/2.11
libsigsegv/2.12
libsm/1.2.2
libsndfile/1.0.23
libsndfile/1.0.28
libsodium/1.0.15
libsvm/322
libszip/2.1.1
libtiff/3.9.7
libtiff/4.0.6
libtiff/4.0.8
libtiff/4.0.10
libtool/2.4.6
libunistring/0.9.7
libunwind/1.1
libvorbis/1.3.5
libx11/1.6.3
libx11/1.6.5
libxau/1.0.8
libxaw/1.0.13
libxc/2.2.2
libxc/3.0.0
libxcb/1.12
libxcb/1.13
libxcomposite/0.4.4
libxcursor/1.1.14
libxdamage/1.1.4
libxdmcp/1.1.2
libxext/1.3.3
libxfixes/5.0.2
libxfont/1.5.2
libxft/2.3.2
libxi/1.7.6
libxinerama/1.1.3
libxkbcommon/0.8.0
libxkbfile/1.0.9
libxml2/2.9.4
libxml2/2.9.10
libxmu/1.1.2
libxp/1.0.3
libxpm/3.5.10
libxpm/3.5.12
libxrender/0.9.10
libxres/1.0.7
libxshmfence/1.2
libxslt/1.1.29
libxslt/1.1.30
libxsmm/1.13
libxt/1.1.5
libxtst/1.2.2
libxv/1.0.10
libxvmc/1.0.9
libzmq/4.3.2
llvm/5.0.1
llvm/6.0.0
lmdb/0.9.16
lmdb/0.9.21
lmod/7.4.11
lmod/7.7.13
lrslib/6.2
lua-jit/2.0.4
lua-luafilesystem/1_6_3
lua-luaposix/33.4.0
lua/5.3.2
lua/5.3.4
lz4/1.7.5
lz4/1.8.1.2
lzip/1.19
lziprecover/1.19
lzlib/1.9
lzma/4.32.7
lzo/2.09
m4/1.4.18
mafft/7.221
magma/2.2.0
magma/2.5.1
man-db/2.7.6.1
maven/3.3.9
maven/3.5.0
mawk/1.3.4
mcl/14-137
mesa-glu/9.0.0
mesa/17.2.3
mesa/18.3.6
metis/5.1.0
mkfontdir/1.0.7
mkfontscale/1.1.2
mono/5.4.1.7
motioncor2/1.2.3
motioncor2/1.3.0
mpc/1.0.3
mpc/1.1.0
mpfr/3.1.5
mpfr/4.0.1
mpich/3.3.1
msgpack-c/3.0.1
mshadow/20170721
mumps/5.1.1
muscle/3.8.31
muscle/3.8.1551
nasm/2.11.06
nasm/2.13.03
ncbi-toolkit/22_0_0
nccl/2.4.8-1
nccl/2.7.8-1
nco/4.6.7
ncurses/6.0
netcdf-cxx/4.2
netcdf/4.4.1
netcdf/4.4.1.1
netcdf/4.6.0
nettle/3.2
nettle/3.3
ninja/1.8.2
ninja/1.9.0
nnvm/20170418
numactl/2.0.11
numactl/2.0.12
ocaml/4.06.0
oce/0.18.2
oce/0.18.3
oniguruma/6.1.3
opari2/2.0.4
openblas/0.2.19
openblas/0.2.20
openblas/0.3.6
openblas/0.3.7
opencv/3.4.3
openexr/2.3.0
openjdk/11.0.2
openjdk/14.0.2
openjpeg/2.3.0
openmpi/2.1.1
openmpi/3.0.1
openmpi/4.0.2
openslide/3.4.1
openssl/1.0.1e
opus/1.1.4
otf2/2.2
p7zip/16.02
pango/1.40.3
pango/1.40.4
pango/1.41.0
papi/5.5.1
parallel/20190222
patch/2.7.5
patch/2.7.6
patchelf/0.9
pbzip2/1.1.13
pcre/8.40
pcre/8.41
pcre/8.43
pcre/8.44
pcre2/10.20
pcre2/10.31
pdt/3.22.1
perl-algorithm-diff/1.1903
perl-alien-build/1.86
perl-alien-libxml2/0.10_01
perl-bioperl/1.7.6
perl-capture-tiny/0.46
perl-class-data-inheritable/0.08
perl-data-stag/0.14
perl-date-calc/6.4
perl-dbi/1.636
perl-devel-stacktrace/2.02
perl-encode-locale/1.05
perl-error/0.17028
perl-exception-class/1.43
perl-exporter-tiny/1.000000
perl-extutils-config/0.008
perl-extutils-helpers/0.026
perl-extutils-installpaths/0.012
perl-extutils-makemaker/7.24
perl-extutils-pkgconfig/1.16
perl-ffi-checklib/0.25
perl-file-chdir/0.1011
perl-file-listing/6.04
perl-file-which/1.22
perl-gd/2.53
perl-gdgraph/1.4308
perl-gdtextutil/0.86
perl-graph/0.9704
perl-html-parser/3.72
perl-html-tagset/3.20
perl-http-cookies/6.04
perl-http-daemon/6.01
perl-http-date/6.02
perl-http-message/6.13
perl-http-negotiate/6.01
perl-io-html/1.001
perl-io-string/1.08
perl-io-stringy/2.111
perl-io-tty/1.13_01
perl-ipc-run/20180523.0
perl-json/2.97001
perl-libwww-perl/6.33
perl-libxml-perl/0.08
perl-list-moreutils-xs/0.428
perl-list-moreutils/0.428
perl-lwp-mediatypes/6.02
perl-module-build-tiny/0.039
perl-module-build/0.4224
perl-net-http/6.17
perl-path-tiny/0.108
perl-readonly/2.05
perl-set-scalar/1.29
perl-sub-uplevel/0.2800
perl-term-readkey/2.37
perl-term-readline-gnu/1.36
perl-termreadkey/2.38
perl-test-deep/1.127
perl-test-differences/0.64
perl-test-exception/0.43
perl-test-most/0.35
perl-test-needs/0.002005
perl-test-requiresinternet/0.05
perl-test-warn/0.30
perl-text-diff/1.45
perl-try-tiny/0.28
perl-uri-escape/1.71
perl-uri/1.72
perl-www-robotrules/6.02
perl-xml-dom-xpath/0.14
perl-xml-dom/1.46
perl-xml-filter-buffertext/1.01
perl-xml-libxml/2.0201
perl-xml-libxslt/1.96
perl-xml-namespacesupport/1.12_9
perl-xml-parser/2.44
perl-xml-regexp/0.04
perl-xml-sax-base/1.09
perl-xml-sax-writer/0.57
perl-xml-sax/1.02
perl-xml-twig/3.52
perl-xml-writer/0.625
perl-xml-xpathengine/0.14
perl-yaml/1.27
perl/5.16.3
perl/5.24.1
perl/5.32.0
picard/2.18.14
picard/2.23.2
pigz/2.4
pixman/0.34.0
pkg-config/0.29.2
pkgconf/1.4.0
pkgconf/1.7.3
plink/1.9-beta6.18
plzip/1.6
poppler-data/0.4.9
poppler/0.65.0
portaudio/190600_20161030
postgresql/9.5.3
postgresql/10.3
postgresql/11.0
postgresql/11.4
ppl/1.2
pplacer/1.1.alpha19
prank/170427
presentproto/1.0
printproto/1.0.5
prodigal/2.6.3
proj/4.9.2
proj/5.2.0
proj/6.3.1
protobuf/3.1.0
protobuf/3.2.0
protobuf/3.3.0
protobuf/3.5.1.1
psipred/4.02
python/2.7.14
python/3.6.4
python/3.7.4
qhull/2015.2
qrupdate/1.1.2
qt/4.8.6
qt/5.9.1
qt/5.10.0
r/3.4.3
r/3.5.1
r/4.0.2
ragel/6.10
randrproto/1.5.0
raptor/2.0.15
rasqal/0.9.33
rdkit/2020_03_6
rdma-core/20
readline/7.0
readline/8.0
recordproto/1.14.2
renderproto/0.11.1
resourceproto/1.2.0
rstudio/1.3.1093
ruby/2.2.0
samtools/1.2
samtools/1.6
samtools/1.10
scala/2.12.1
scons/2.5.0
scons/3.0.1
scotch/6.0.3
scotch/6.0.4
scotch/6.0.6
sdl2/2.0.5
sed/4.2.2
seqtk/1.2
seqtk/1.3
serf/1.3.8
serf/1.3.9
setxkbmap/1.3.1
sharc/2.1.1
shared-mime-info/1.8
silo/4.10.2
snappy/1.1.7
sos/1.4.3
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sox/14.4.2
spades/3.6.2
spades/3.10.0
spades/3.11.1
sparsehash/2.0.3
spglib/1.10.3
sqlite/3.18.0
sqlite/3.22.0
sqlite/3.30.0
sra-toolkit/2.8.1
sra-toolkit/2.8.2-1
sra-toolkit/2.9.2
sra-toolkit/2.10.5
star/2.5.3a
star/2.7.2d
sublime-text/2.0.2
subread/2.0.1
subversion/1.9.5
subversion/1.9.7
suite-sparse/5.1.0
superlu/5.2.0
superlu/5.2.1
swig/2.0.12
swig/3.0.10
swig/3.0.11
swig/3.0.12
sz/1.4.12.3
tar/1.29
tcl-tcllib/1.19
tcl/8.6.6
tcl/8.6.8
tcl/8.6.10
tetgen/1.5.0
texinfo/6.3
texinfo/6.5
texlive/live
timidity/2.14.0
tk/8.6.6
tk/8.6.8
tmux/2.4
tmux/2.6
tophat/2.1.2
tree/1.7.0
trimmomatic/0.35
trimmomatic/0.36
trimmomatic/0.38
ucx/1.6.1
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unison/2.48.4
units/2.13
unixodbc/2.3.4
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util-linux/2.29.1
util-linux/2.29.2
util-macros/1.19.1
uuid/1.6.2
valgrind/3.13.0
vcftools/0.1.14
velvet/1.2.10
videoproto/2.3.3
vim/8.0.0503
vim/8.0.1376
vim/8.1.1746
vmatch/2.3.0
wget/1.17
wget/1.19.1
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wx/3.1.0
wxwidgets/3.1.0
xauth/1.0.9
xbitmaps/1.1.1
xcb-proto/1.12
xcb-proto/1.13
xcb-util-cursor/0.1.3
xcb-util-errors/1.0
xcb-util-image/0.4.0
xcb-util-keysyms/0.4.0
xcb-util-renderutil/0.3.9
xcb-util-wm/0.4.1
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xerces-c/3.1.4
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xhost/1.0.7
xineramaproto/1.2.1
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xproto/7.0.31
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xz/5.2.3
yasm/1.3.0
zeromq/4.2.2
zip/3.0
zlib/1.2.9
zlib/1.2.11
zsh/5.1.1
zsh/5.4.2
zstd/1.3.0

GCC 6.3.0

abcluster/2.1
abseil-cpp/20190808
ack/2.22
alglib/3.11.0
alsa-lib/1.1.4.1
angsd/0.921
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aspell/0.60.6.1
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atk/2.21.90
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automake/1.15.1
automake/1.16.2
bam-readcount/0.8.0
bamtools/2.5.1
bash-completion/2.7
bash/4.4
bash/4.4.12
bazel/0.9.0
bazel/0.11.1
bazel/0.24.1
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bbmap/37.36
bc/1.07
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bdw-gc/7.6.0
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berkeley-db/5.3.28
berkeley-db/6.2.32
binutils/2.28
binutils/2.29.1
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bison/3.4.2
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blast-plus/2.9.0
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blat/36
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blaze/3.2
bliss/0.73
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boost/1.62.0
boost/1.63.0
boost/1.64.0
boost/1.66.0
boost/1.68.0
boost/1.69.0
boost/1.73.0
bowtie/1.2
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bowtie2/2.3.5.1
bpp-core/2.2.0
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breseq/0.32.0
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bwa/0.7.15
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cairo/1.14.12
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cdbfasta/2017-03-16
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cdhit/4.6.8
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cmake/3.14.4
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cmocka/1.1.1
colm/0.12.0
compositeproto/0.4.2
coreutils/8.26
cppad/20170000.8
cppcheck/1.81
cppunit/1.13.2
cscope/15.8b
cub/1.7.1
cube/4.3.5
cuda/8.0.61
cuda/9.0.176
cuda/9.1.85
cuda/9.2.88
cuda/10.0.130
cuda/10.1.243
cuda/11.0.3
cudnn/5.1
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cudnn/7.0
cudnn/7.2
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cudnn/7.4
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cufflinks/2.2.1
cups/2.2.3
curl/7.53.1
curl/7.59.0
curl/7.61.1
curl/7.72.0
cvs/1.12.13
czmq/4.0.2
damageproto/1.2.1
dante/1.4.2
datamash/1.1.0
dbus/1.11.2
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diamond/0.9.14
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direnv/2.11.3
dmd/2.081.1
dmlc-core/20170508
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dos2unix/7.3.4
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dri3proto/1.0
ea-utils/1.04.807
ed/1.4
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emacs/26.1
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fastq-screen/0.11.2
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fastqc/0.11.9
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fontcacheproto/0.1.3
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fontsproto/2.1.3
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freetype/2.7.1
freexl/1.0.5
gatk/4.0.4.0
gatk/4.0.10.0
gatk/4.1.1.0
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gdbm/1.18.1
gdk-pixbuf/2.31.2
gdk-pixbuf/2.31.3
gdk-pixbuf/2.31.4
gdk-pixbuf/2.31.6
gemmlowp/a6f29d9ac
geos/3.6.2
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ghostscript-fonts/8.11
ghostscript/9.21
giflib/5.1.4
git-lfs/2.3.0
git/2.12.1
git/2.15.1
glew/2.0.0
glib/2.49.7
glib/2.50.3
glib/2.53.1
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glib/2.56.1
glm/0.9.7.1
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glog/0.3.5
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glpk/4.65
glproto/1.4.17
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gmake/4.2.1
gmp/6.1.2
gnat/2016
gnuplot/5.2.0
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go-bootstrap/1.4-bootstrap-20161024
go-bootstrap/1.4-bootstrap-20171003
go/1.8.1
go/1.10.1
go/1.11.1
gobject-introspection/1.49.1
gobject-introspection/1.49.2
gobject-introspection/1.50.0
googletest/1.8.1
gperf/3.0.4
gperftools/2.4
graphtyper/1.3
groff/1.22.3
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gsl/2.4
gtkplus/2.24.32
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guile/2.2.0
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harminv/1.4
hdf/4.2.12
hdf/4.2.13
hdf5/1.10.1
help2man/1.47.4
highfive/1.5
hisat2/2.1.0
htop/2.0.2
htslib/1.2
htslib/1.3.1
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htslib/1.7
htslib/1.10.2
hwloc/1.11.6
hwloc/1.11.8
hwloc/1.11.9
hwloc/1.11.10
hwloc/1.11.12
hwloc/2.0.1
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hydra/3.3.1
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icu4c/58.2
icu4c/60.1
id3lib/3.8.3
idba/1.1.3
igv/2.8.2
ilmbase/2.3.0
image-magick/7.0.5-9
imake/1.0.7
inputproto/2.3.2
intel-tbb/2018.2
intltool/0.51.0
isl/0.14
isl/0.15
isl/0.18
isl/0.19
jags/4.3.0
jansson/2.9
jasper/1.900.1
jdk/8u141-b15
jemalloc/4.5.0
jmol/14.8.0
jq/1.5
json-c/0.13.1
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judy/1.0.5
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kbproto/1.0.7
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libaio/0.3.110
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libassuan/2.4.5
libatomic-ops/7.4.4
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libbsd/0.10.0
libcerf/1.3
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libctl/3.2.2
libdrm/2.4.70
libdrm/2.4.81
libdwarf/20160507
libedit/3.1-20170329
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libgeotiff/1.5.1
libgme/0.6.2
libgpg-error/1.21
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libgpuarray/0.7.5
libgtextutils/0.7
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libiconv/1.15
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libidn2/2.0.5
libidn2/2.1.1
libint/2.2.0
libjpeg-turbo/1.5.0
libjpeg-turbo/1.5.3
libjpeg/9b
libjpeg/9c
libmng/2.0.2
libmng/2.0.3
libnl/3.3.0
libogg/1.3.2
libopenal/1.17.2
libopenal/1.18.2
libpcap/1.8.1
libpciaccess/0.13.4
libpciaccess/0.13.5
libpipeline/1.4.2
libpng/1.6.27
libpng/1.6.34
libpthread-stubs/0.3
libpthread-stubs/0.4
librdf/1.0.17
libsigsegv/2.11
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libsm/1.2.2
libsndfile/1.0.23
libsndfile/1.0.28
libsodium/1.0.15
libsvm/322
libszip/2.1.1
libtiff/3.9.7
libtiff/4.0.6
libtiff/4.0.8
libtiff/4.0.10
libtool/2.4.6
libunistring/0.9.7
libunwind/1.1
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libx11/1.6.3
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libxau/1.0.8
libxaw/1.0.13
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libxcomposite/0.4.4
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libxdmcp/1.1.2
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libxv/1.0.10
libxvmc/1.0.9
libzmq/4.3.2
llvm/6.0.0
lmdb/0.9.16
lmdb/0.9.21
lrslib/6.2
lua-jit/2.0.4
lua-luafilesystem/1_6_3
lua-luaposix/33.4.0
lua/5.3.2
lua/5.3.4
lz4/1.7.5
lz4/1.8.1.2
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m4/1.4.18
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magma/2.2.0
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man-db/2.7.6.1
maven/3.3.9
maven/3.5.0
mawk/1.3.4
mcl/14-137
mesa/17.2.3
mesa/18.3.6
metis/5.1.0
mkfontdir/1.0.7
mkfontscale/1.1.2
mono/5.4.1.7
motioncor2/1.2.3
motioncor2/1.3.0
mpc/1.0.3
mpc/1.1.0
mpfr/3.1.5
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msgpack-c/3.0.1
mshadow/20170721
muscle/3.8.31
muscle/3.8.1551
nasm/2.11.06
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ncbi-toolkit/22_0_0
nccl/2.4.8-1
nccl/2.7.8-1
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netcdf-cxx/4.2
netcdf/4.4.1
netcdf/4.4.1.1
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nettle/3.2
nettle/3.3
ninja/1.8.2
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nnvm/20170418
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oce/0.18.2
oce/0.18.3
oniguruma/6.1.3
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openssl/1.0.1e
opus/1.1.4
otf2/2.2
p7zip/16.02
pango/1.40.3
pango/1.40.4
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papi/5.5.1
parallel/20190222
patch/2.7.5
patch/2.7.6
patchelf/0.9
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pcre/8.40
pcre/8.41
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perl-algorithm-diff/1.1903
perl-alien-build/1.86
perl-alien-libxml2/0.10_01
perl-bioperl/1.7.6
perl-capture-tiny/0.46
perl-class-data-inheritable/0.08
perl-data-stag/0.14
perl-date-calc/6.4
perl-dbi/1.636
perl-devel-stacktrace/2.02
perl-encode-locale/1.05
perl-error/0.17028
perl-exception-class/1.43
perl-exporter-tiny/1.000000
perl-extutils-config/0.008
perl-extutils-helpers/0.026
perl-extutils-installpaths/0.012
perl-extutils-makemaker/7.24
perl-extutils-pkgconfig/1.16
perl-ffi-checklib/0.25
perl-file-chdir/0.1011
perl-file-listing/6.04
perl-file-which/1.22
perl-gd/2.53
perl-gdgraph/1.4308
perl-gdtextutil/0.86
perl-graph/0.9704
perl-html-parser/3.72
perl-html-tagset/3.20
perl-http-cookies/6.04
perl-http-daemon/6.01
perl-http-date/6.02
perl-http-message/6.13
perl-http-negotiate/6.01
perl-io-html/1.001
perl-io-string/1.08
perl-io-stringy/2.111
perl-io-tty/1.13_01
perl-ipc-run/20180523.0
perl-json/2.97001
perl-libwww-perl/6.33
perl-libxml-perl/0.08
perl-list-moreutils-xs/0.428
perl-list-moreutils/0.428
perl-lwp-mediatypes/6.02
perl-module-build-tiny/0.039
perl-module-build/0.4224
perl-net-http/6.17
perl-path-tiny/0.108
perl-readonly/2.05
perl-set-scalar/1.29
perl-sub-uplevel/0.2800
perl-term-readkey/2.37
perl-term-readline-gnu/1.36
perl-termreadkey/2.38
perl-test-deep/1.127
perl-test-differences/0.64
perl-test-exception/0.43
perl-test-most/0.35
perl-test-needs/0.002005
perl-test-requiresinternet/0.05
perl-test-warn/0.30
perl-text-diff/1.45
perl-try-tiny/0.28
perl-uri-escape/1.71
perl-uri/1.72
perl-www-robotrules/6.02
perl-xml-dom-xpath/0.14
perl-xml-dom/1.46
perl-xml-filter-buffertext/1.01
perl-xml-libxml/2.0201
perl-xml-libxslt/1.96
perl-xml-namespacesupport/1.12_9
perl-xml-parser/2.44
perl-xml-regexp/0.04
perl-xml-sax-base/1.09
perl-xml-sax-writer/0.57
perl-xml-sax/1.02
perl-xml-twig/3.52
perl-xml-writer/0.625
perl-xml-xpathengine/0.14
perl-yaml/1.27
perl/5.24.1
perl/5.32.0
picard/2.18.14
picard/2.23.2
pigz/2.4
pixman/0.34.0
pkg-config/0.29.2
pkgconf/1.4.0
pkgconf/1.7.3
plink/1.9-beta6.18
plzip/1.6
polymake/3.5
poppler-data/0.4.9
poppler/0.65.0
portaudio/190600_20161030
postgresql/9.5.3
postgresql/10.3
postgresql/11.0
postgresql/11.4
ppl/1.2
pplacer/1.1.alpha19
prank/170427
presentproto/1.0
printproto/1.0.5
prodigal/2.6.3
proj/4.9.2
proj/5.2.0
proj/6.3.1
protobuf/3.1.0
protobuf/3.2.0
protobuf/3.3.0
protobuf/3.5.1.1
pymol/2.5.0
python/2.7.14
python/3.6.4
python/3.7.4
python/3.8.5
python_gpu/3.8.5
qhull/2015.2
qrupdate/1.1.2
qt/4.8.6
qt/5.10.0
r/3.4.3
r/3.5.1
r/4.0.2
ragel/6.10
randrproto/1.5.0
raptor/2.0.15
rasqal/0.9.33
rdkit/2020_03_6
rdma-core/20
readline/7.0
readline/8.0
recordproto/1.14.2
renderproto/0.11.1
resourceproto/1.2.0
rstudio/1.3.1093
ruby/2.2.0
samtools/1.2
samtools/1.6
samtools/1.10
scala/2.12.1
scons/2.5.0
scons/3.0.1
scotch/6.0.3
scotch/6.0.4
scotch/6.0.6
sdl2/2.0.5
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seqan/2.4.0
seqtk/1.2
seqtk/1.3
serf/1.3.8
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sox/14.4.2
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spades/3.11.1
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sqlite/3.22.0
sqlite/3.30.0
sra-toolkit/2.8.1
sra-toolkit/2.8.2-1
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sra-toolkit/2.10.5
star/2.5.3a
star/2.7.2d
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swig/2.0.12
swig/3.0.10
swig/3.0.11
swig/3.0.12
sz/1.4.12.3
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tcl-tcllib/1.19
tcl/8.6.6
tcl/8.6.8
tcl/8.6.10
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texinfo/6.3
texinfo/6.5
texlive/live
timidity/2.14.0
tk/8.6.6
tk/8.6.8
tmux/2.4
tmux/2.6
tree/1.7.0
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trimmomatic/0.36
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util-linux/2.29.2
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uuid/1.6.2
valgrind/3.13.0
vcftools/0.1.14
velvet/1.2.10
videoproto/2.3.3
vim/8.0.0503
vim/8.0.1376
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vmatch/2.3.0
wget/1.17
wget/1.19.1
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wx/3.1.0
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xauth/1.0.9
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xcb-proto/1.12
xcb-proto/1.13
xcb-util-cursor/0.1.3
xcb-util-errors/1.0
xcb-util-image/0.4.0
xcb-util-keysyms/0.4.0
xcb-util-renderutil/0.3.9
xcb-util-wm/0.4.1
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xerces-c/3.1.4
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xineramaproto/1.2.1
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xz/5.2.3
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zeromq/4.2.2
zip/3.0
zlib/1.2.11
zsh/5.1.1
zsh/5.4.2
zstd/1.3.0

GCC 8.2.0

abseil-cpp/20190808
ack/2.22
alglib/3.11.0
alsa-lib/1.1.4.1
angsd/0.921
angsd/0.925
ann/1.1.2
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automake/1.16.2
bam-readcount/0.8.0
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berkeley-db/6.2.32
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boost/1.63.0
boost/1.64.0
boost/1.66.0
boost/1.68.0
boost/1.69.0
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bowtie2/2.3.4.1
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curl/7.53.1
curl/7.59.0
curl/7.61.1
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gemmlowp/a6f29d9ac
geos/3.6.2
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ghostscript-fonts/8.11
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git-lfs/2.3.0
git/2.12.1
git/2.15.1
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go-bootstrap/1.4-bootstrap-20161024
go-bootstrap/1.4-bootstrap-20171003
go/1.8.1
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go/1.11.1
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igv/2.8.2
ilmbase/2.3.0
image-magick/7.0.5-9
imake/1.0.7
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intel-tbb/2018.2
intltool/0.51.0
isl/0.14
isl/0.15
isl/0.18
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jq/1.5
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libjpeg-turbo/1.5.3
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lmdb/0.9.16
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lua-jit/2.0.4
lua-luafilesystem/1_6_3
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lua/5.3.2
lua/5.3.4
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m4/1.4.18
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man-db/2.7.6.1
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maven/3.5.0
mawk/1.3.4
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mesa-glu/9.0.0
mesa/17.2.3
mesa/18.3.6
metis/5.1.0
mkfontdir/1.0.7
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mono/5.4.1.7
motioncor2/1.2.3
motioncor2/1.3.0
mpc/1.0.3
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ncbi-toolkit/22_0_0
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netcdf-cxx/4.2
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nettle/3.3
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oniguruma/6.1.3
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opus/1.1.4
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perl-algorithm-diff/1.1903
perl-alien-build/1.86
perl-alien-libxml2/0.10_01
perl-bioperl/1.7.6
perl-capture-tiny/0.46
perl-class-data-inheritable/0.08
perl-data-stag/0.14
perl-date-calc/6.4
perl-dbi/1.636
perl-devel-stacktrace/2.02
perl-encode-locale/1.05
perl-error/0.17028
perl-exception-class/1.43
perl-exporter-tiny/1.000000
perl-extutils-config/0.008
perl-extutils-helpers/0.026
perl-extutils-installpaths/0.012
perl-extutils-makemaker/7.24
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perl-ffi-checklib/0.25
perl-file-chdir/0.1011
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perl-gdgraph/1.4308
perl-gdtextutil/0.86
perl-graph/0.9704
perl-html-parser/3.72
perl-html-tagset/3.20
perl-http-cookies/6.04
perl-http-daemon/6.01
perl-http-date/6.02
perl-http-message/6.13
perl-http-negotiate/6.01
perl-io-html/1.001
perl-io-string/1.08
perl-io-stringy/2.111
perl-io-tty/1.13_01
perl-ipc-run/20180523.0
perl-json/2.97001
perl-libwww-perl/6.33
perl-libxml-perl/0.08
perl-list-moreutils-xs/0.428
perl-list-moreutils/0.428
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perl-module-build-tiny/0.039
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perl-net-http/6.17
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perl-readonly/2.05
perl-set-scalar/1.29
perl-sub-uplevel/0.2800
perl-term-readkey/2.37
perl-term-readline-gnu/1.36
perl-termreadkey/2.38
perl-test-deep/1.127
perl-test-differences/0.64
perl-test-exception/0.43
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perl-test-needs/0.002005
perl-test-requiresinternet/0.05
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perl-text-diff/1.45
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perl-xml-filter-buffertext/1.01
perl-xml-libxml/2.0201
perl-xml-libxslt/1.96
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perl-xml-parser/2.44
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perl-xml-sax-base/1.09
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perl-xml-twig/3.52
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perl-xml-xpathengine/0.14
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perl/5.24.1
perl/5.32.0
picard/2.18.14
picard/2.23.2
pigz/2.4
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plink/1.9-beta6.18
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polymake/3.5
poppler-data/0.4.9
poppler/0.65.0
portaudio/190600_20161030
postgresql/9.5.3
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postgresql/11.0
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ppl/1.2
pplacer/1.1.alpha19
prank/170427
presentproto/1.0
printproto/1.0.5
prodigal/2.6.3
proj/4.9.2
proj/5.2.0
proj/6.3.1
protobuf/3.1.0
protobuf/3.2.0
protobuf/3.3.0
protobuf/3.5.1.1
python/2.7.14
python/3.6.4
qhull/2015.2
qrupdate/1.1.2
qt/4.8.6
qt/5.10.0
r/3.4.3
r/3.5.1
r/4.0.2
ragel/6.10
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recordproto/1.14.2
renderproto/0.11.1
resourceproto/1.2.0
ruby/2.2.0
samtools/1.2
samtools/1.6
samtools/1.10
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scotch/6.0.4
scotch/6.0.6
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swig/2.0.12
swig/3.0.10
swig/3.0.11
swig/3.0.12
sz/1.4.12.3
tar/1.29
tcl-tcllib/1.19
tcl/8.6.6
tcl/8.6.8
tcl/8.6.10
tetgen/1.5.0
texinfo/6.3
texinfo/6.5
timidity/2.14.0
tk/8.6.6
tk/8.6.8
tmux/2.4
tmux/2.6
tree/1.7.0
trimmomatic/0.35
trimmomatic/0.36
trimmomatic/0.38
ucx/1.6.1
udunits2/2.2.24
unison/2.48.4
units/2.13
unixodbc/2.3.4
unzip/6.0
util-linux/2.29.1
util-linux/2.29.2
util-macros/1.19.1
uuid/1.6.2
vcftools/0.1.14
velvet/1.2.10
videoproto/2.3.3
vim/8.0.0503
vim/8.0.1376
vim/8.1.1746
vmatch/2.3.0
wget/1.17
wget/1.19.1
wx/3.1.0
wxwidgets/3.1.0
xauth/1.0.9
xbitmaps/1.1.1
xcb-proto/1.12
xcb-proto/1.13
xcb-util-cursor/0.1.3
xcb-util-errors/1.0
xcb-util-image/0.4.0
xcb-util-keysyms/0.4.0
xcb-util-renderutil/0.3.9
xcb-util-wm/0.4.1
xcb-util/0.4.0
xerces-c/3.1.4
xextproto/7.3.0
xhost/1.0.7
xineramaproto/1.2.1
xkbcomp/1.3.1
xkbdata/1.0.1
xmgrace/5.1.25
xproto/7.0.29
xproto/7.0.31
xtb/6.2.3
xtrans/1.3.5
xz/5.2.3
yasm/1.3.0
zip/3.0
zlib/1.2.11
zsh/5.1.1
zsh/5.4.2
zstd/1.3.0

Intel 18.0.1

Please note that the Intel 18.0.1 toolchain and the available packages for this toolchain were compiled with Intel CPU specific optimization flags. Because of this, these packages cannot be used on Euler compute nodes with AMD CPUs (Euler VI and the coming Euler VII). If you would like to use compute nodes with AMD CPUs, then please use the new Intel 19.1.0 toolchain, which is compatible with AMD CPUs.

abaqus/2016
abaqus/2018
abaqus/2019
abaqus/2020
abseil-cpp/20190808
ack/2.22
alglib/3.11.0
alsa-lib/1.1.4.1
angsd/0.925
ann/1.1.2
ant/1.9.9
antlr/2.7.7
apr-util/1.5.4
apr-util/1.6.0
apr/1.5.2
apr/1.6.2
aragorn/1.2.38
arb/2.17.0
argtable/2-13
aspell/0.60.6.1
astral/4.10.7
astyle/3.0.1
atk/2.20.0
atk/2.21.90
atompaw/4.0.0.13
atop/2.2-3
autoconf/2.69
automake/1.15
automake/1.15.1
bam-readcount/0.8.0
bamtools/2.5.1
bamutil/1.0.13
bash-completion/2.7
bash/4.4
bash/4.4.12
bbmap/37.36
bc/1.07
bcftools/1.6
bdw-gc/7.4.4
bdw-gc/7.6.0
beagle/3.3.2
beagle/4.1
beagle/5.1
beast1/1.8.4
beast2/2.4.6
beast2/2.5.2
bedops/2.4.36
bedtools2/2.26.0
bedtools2/2.27.1
bedtools2/2.29.2
berkeley-db/5.3.28
berkeley-db/6.2.32
binutils/2.28
binutils/2.29.1
bismark/0.19.0
bison/3.0.4
bitmap/1.0.8
blat/35
blat/36
blaze/3.1
blaze/3.2
bliss/0.73
blitz/1.0.1
boost/1.62.0
boost/1.63.0
boost/1.64.0
boost/1.66.0
boost/1.68.0
boost/1.69.0
boost/1.73.0
bowtie2/2.3.4.1
bowtie2/2.3.5.1
bpp-core/2.2.0
bpp-phyl/2.2.0
bpp-seq/2.2.0
bpp-suite/2.2.0
breseq/0.30.1
breseq/0.34.1
bwa/0.7.12
bwa/0.7.15
bwa/0.7.17
bzip2/1.0.6
c-blosc/1.12.1
cairo/1.14.8
cairo/1.14.10
cairo/1.14.12
cap3/2015-02-11
cares/1.13.0
cdbfasta/2017-03-16
cddlib/0.94h
cdhit/4.6.8
cereal/1.2.2
cgal/4.11
clhep/2.4.1.3
cloc/1.74
clustalo/1.2.4
clustalw/2.1
cmake/2.8.10.2
cmake/3.4.3
cmake/3.5.2
cmake/3.8.0
cmake/3.9.4
cmake/3.12.0
cmake/3.12.1
cmake/3.12.4
cmake/3.14.4
cmake/3.15.3
cmake/3.16.5
cmocka/1.1.1
colm/0.12.0
compositeproto/0.4.2
coreutils/8.26
cppad/20170000.8
cppcheck/1.81
cppunit/1.13.2
cscope/15.8b
cub/1.7.1
cube/4.3.5
cuda/8.0.61
cuda/9.0.176
cuda/9.1.85
cuda/9.2.88
cuda/10.0.130
cuda/10.1.243
cuda/11.0.3
cudnn/5.1
cudnn/6.0
cudnn/7.0
cudnn/7.2
cudnn/7.3
cudnn/7.4
cudnn/7.5
cudnn/7.6.4
cudnn/8.0.5
cufflinks/2.2.1
curl/7.53.1
curl/7.61.1
cvs/1.12.13
czmq/4.0.2
damageproto/1.2.1
dante/1.4.2
datamash/1.1.0
dbus/1.11.2
dbus/1.12.10
diamond/0.9.14
diamond/0.9.22
diamond/0.9.24
diamond/0.9.28
dmlc-core/20170508
dmxproto/2.3.1
dos2unix/7.3.4
double-conversion/2.0.1
dri2proto/2.8
dri3proto/1.0
ed/1.4
eigen/3.3.4
emacs/26.1
emboss/6.6.0
exonerate/2.4.0
expat/2.2.0
expat/2.2.2
exuberant-ctags/5.8
farmhash/92e897
fastqc/0.11.4
fastqc/0.11.5
fastqc/0.11.9
ffmpeg/3.2.4
fftw/3.3.5
findutils/4.6.0
fixesproto/5.0
flex/2.6.1
flex/2.6.3
flex/2.6.4
flint/2.5.2
fltk/1.3.3
font-util/1.3.1
fontcacheproto/0.1.3
fontconfig/2.11.1
fontconfig/2.12.3
fontsproto/2.1.3
fonttosfnt/1.0.4
freetype/2.7
freetype/2.7.1
freexl/1.0.5
gatk/4.0.4.0
gatk/4.0.10.0
gatk/4.1.1.0
gawk/4.1.4
gdal/3.1.2
gdbm/1.13
gdbm/1.14.1
gdk-pixbuf/2.31.2
gdk-pixbuf/2.31.3
gdk-pixbuf/2.31.4
gdk-pixbuf/2.31.6
gemmlowp/a6f29d9ac
geos/3.6.2
gettext/0.19.8.1
gflags/2.1.2
ghostscript-fonts/8.11
ghostscript/9.21
giflib/5.1.4
git/2.12.1
git/2.15.1
glew/2.0.0
glib/2.49.7
glib/2.50.3
glib/2.53.1
glib/2.56.0
glib/2.56.1
glm/0.9.7.1
global/6.5
glog/0.3.4
glog/0.3.5
glpk/4.55
glpk/4.61
glproto/1.4.17
gmake/4.0
gmake/4.2.1
gmp/6.1.2
gnat/2016
go-bootstrap/1.4-bootstrap-20161024
go-bootstrap/1.4-bootstrap-20171003
gobject-introspection/1.49.1
gobject-introspection/1.49.2
gobject-introspection/1.50.0
googletest/1.8.1
gperf/3.0.4
gperftools/2.4
groff/1.22.3
gsl/1.16
gsl/2.3
gsl/2.4
gtkplus/2.24.32
gts/121130
guile/2.0.14
harfbuzz/1.4.5
harfbuzz/1.4.6
harfbuzz/1.4.7
harfbuzz/1.4.8
harminv/1.4
hdf/4.2.12
hdf/4.2.13
hdf5/1.10.1
help2man/1.47.4
highfive/1.5
highwayhash/dfcb97
hisat2/2.1.0
htop/2.0.2
htslib/1.2
htslib/1.3.1
htslib/1.6
htslib/1.7
htslib/1.10.2
hwloc/1.11.6
hwloc/1.11.8
hwloc/1.11.9
hwloc/1.11.10
hwloc/1.11.12
hwloc/2.0.1
hwloc/2.2.0
hypre/2.13.0
icu4c/58.2
icu4c/60.1
idba/1.1.3
igv/2.8.2
image-magick/7.0.5-9
imake/1.0.7
inputproto/2.3.2
intel-tbb/2018.2
intltool/0.51.0
isl/0.14
isl/0.15
isl/0.18
isl/0.19
jags/4.3.0
jansson/2.9
jasper/1.900.1
jdk/8u141-b15
jemalloc/4.5.0
jmol/14.8.0
jq/1.5
json-c/0.13.1
jsoncpp/1.7.3
judy/1.0.5
kbproto/1.0.7
krb5/1.16.1
lcms/2.8
leveldb/1.20
lftp/4.8.1
libaio/0.3.110
libarchive/3.2.1
libarchive/3.3.2
libassuan/2.4.5
libatomic-ops/7.4.4
libbsd/0.8.6
libcheck/0.12.0
libctl/3.2.2
libdrm/2.4.70
libdrm/2.4.81
libedit/3.1-20170329
libelf/0.8.13
libevent/2.0.19
libevent/2.0.21
libfabric/1.8.0
libffi/3.2.1
libfontenc/1.1.3
libfs/1.0.7
libgcrypt/1.6.2
libgcrypt/1.8.1
libgd/2.2.4
libgeotiff/1.5.1
libgme/0.6.2
libgpg-error/1.21
libgpg-error/1.27
libgtextutils/0.7
libice/1.0.9
libiconv/1.15
libidn2/2.0.5
libidn2/2.1.1
libint/2.2.0
libjpeg-turbo/1.5.0
libjpeg-turbo/1.5.3
libjpeg/9b
libjpeg/9c
libmng/2.0.2
libmng/2.0.3
libnl/3.3.0
libogg/1.3.2
libopenal/1.17.2
libopenal/1.18.2
libpcap/1.8.1
libpciaccess/0.13.4
libpciaccess/0.13.5
libpipeline/1.4.2
libpng/1.6.27
libpng/1.6.34
libpthread-stubs/0.3
libpthread-stubs/0.4
librdf/1.0.17
libsigsegv/2.11
libsm/1.2.2
libsodium/1.0.15
libsvm/322
libszip/2.1.1
libtiff/3.9.7
libtiff/4.0.6
libtiff/4.0.8
libtiff/4.0.10
libtool/2.4.6
libunistring/0.9.7
libunwind/1.1
libvorbis/1.3.5
libx11/1.6.3
libx11/1.6.5
libxau/1.0.8
libxaw/1.0.13
libxc/2.2.2
libxc/3.0.0
libxcb/1.12
libxcb/1.13
libxcomposite/0.4.4
libxcursor/1.1.14
libxdamage/1.1.4
libxdmcp/1.1.2
libxext/1.3.3
libxfixes/5.0.2
libxfont/1.5.2
libxft/2.3.2
libxi/1.7.6
libxinerama/1.1.3
libxkbcommon/0.8.0
libxkbfile/1.0.9
libxml2/2.9.4
libxmu/1.1.2
libxp/1.0.3
libxpm/3.5.10
libxpm/3.5.12
libxrender/0.9.10
libxres/1.0.7
libxshmfence/1.2
libxslt/1.1.29
libxslt/1.1.30
libxsmm/1.13
libxt/1.1.5
libxv/1.0.10
libxvmc/1.0.9
libzmq/4.3.2
lmdb/0.9.16
lmdb/0.9.21
lrslib/6.2
lua-jit/2.0.4
lua-luafilesystem/1_6_3
lua-luaposix/33.4.0
lua/5.3.2
lua/5.3.4
lz4/1.7.5
lz4/1.8.1.2
lzip/1.19
lziprecover/1.19
lzlib/1.9
lzma/4.32.7
lzo/2.09
m4/1.4.18
mafft/7.221
magma/2.5.1
man-db/2.7.6.1
maven/3.3.9
maven/3.5.0
mawk/1.3.4
mcl/14-137
mesa-glu/9.0.0
mesa/17.2.3
mesa/18.3.6
metis/5.1.0
mkfontdir/1.0.7
mkfontscale/1.1.2
motioncor2/1.2.3
motioncor2/1.3.0
mpc/1.0.3
mpc/1.1.0
mpfr/3.1.5
mpfr/4.0.1
msgpack-c/3.0.1
mshadow/20170721
mumps/5.1.1
muscle/3.8.31
muscle/3.8.1551
nasm/2.11.06
nasm/2.13.03
ncbi-toolkit/22_0_0
nccl/2.4.8-1
nccl/2.7.8-1
nco/4.6.7
ncurses/6.0
netcdf-cxx/4.2
netcdf/4.4.1
netcdf/4.4.1.1
netcdf/4.6.0
nettle/3.2
nettle/3.3
ninja/1.8.2
ninja/1.9.0
nnvm/20170418
numactl/2.0.11
numactl/2.0.12
ocaml/4.06.0
oce/0.18.2
oce/0.18.3
oniguruma/6.1.3
opari2/2.0.4
openblas/0.2.19
openblas/0.2.20
openjdk/11.0.2
openjdk/14.0.2
openjpeg/2.3.0
openmpi/2.1.1
openmpi/3.0.1
openslide/3.4.1
openssl/1.0.1e
opus/1.1.4
otf2/2.2
p7zip/16.02
pango/1.40.3
pango/1.40.4
pango/1.41.0
papi/5.5.1
parallel/20190222
patch/2.7.5
patch/2.7.6
patchelf/0.9
pbzip2/1.1.13
pcre/8.40
pcre/8.41
pcre2/10.20
pcre2/10.31
pdt/3.22.1
perl-algorithm-diff/1.1903
perl-alien-build/1.86
perl-alien-libxml2/0.10_01
perl-bioperl/1.7.6
perl-capture-tiny/0.46
perl-class-data-inheritable/0.08
perl-data-stag/0.14
perl-date-calc/6.4
perl-dbi/1.636
perl-devel-stacktrace/2.02
perl-encode-locale/1.05
perl-error/0.17028
perl-exception-class/1.43
perl-exporter-tiny/1.000000
perl-extutils-config/0.008
perl-extutils-helpers/0.026
perl-extutils-installpaths/0.012
perl-extutils-makemaker/7.24
perl-extutils-pkgconfig/1.16
perl-ffi-checklib/0.25
perl-file-chdir/0.1011
perl-file-which/1.22
perl-gd/2.53
perl-gdgraph/1.4308
perl-gdtextutil/0.86
perl-graph/0.9704
perl-html-parser/3.72
perl-html-tagset/3.20
perl-http-cookies/6.04
perl-http-daemon/6.01
perl-http-date/6.02
perl-http-message/6.13
perl-http-negotiate/6.01
perl-io-html/1.001
perl-io-string/1.08
perl-io-stringy/2.111
perl-io-tty/1.13_01
perl-ipc-run/20180523.0
perl-json/2.97001
perl-libwww-perl/6.33
perl-libxml-perl/0.08
perl-list-moreutils-xs/0.428
perl-list-moreutils/0.428
perl-lwp-mediatypes/6.02
perl-module-build-tiny/0.039
perl-module-build/0.4224
perl-net-http/6.17
perl-path-tiny/0.108
perl-readonly/2.05
perl-set-scalar/1.29
perl-sub-uplevel/0.2800
perl-term-readkey/2.37
perl-term-readline-gnu/1.36
perl-termreadkey/2.38
perl-test-deep/1.127
perl-test-differences/0.64
perl-test-exception/0.43
perl-test-most/0.35
perl-test-needs/0.002005
perl-test-requiresinternet/0.05
perl-test-warn/0.30
perl-text-diff/1.45
perl-try-tiny/0.28
perl-uri-escape/1.71
perl-uri/1.72
perl-www-robotrules/6.02
perl-xml-dom-xpath/0.14
perl-xml-dom/1.46
perl-xml-filter-buffertext/1.01
perl-xml-libxml/2.0201
perl-xml-libxslt/1.96
perl-xml-namespacesupport/1.12_9
perl-xml-parser/2.44
perl-xml-regexp/0.04
perl-xml-sax-base/1.09
perl-xml-sax-writer/0.57
perl-xml-sax/1.02
perl-xml-twig/3.52
perl-xml-writer/0.625
perl-xml-xpathengine/0.14
perl-yaml/1.27
perl/5.24.1
picard/2.18.14
picard/2.23.2
pigz/2.4
pixman/0.34.0
pkg-config/0.29.2
pkgconf/1.4.0
pkgconf/1.7.3
plink/1.9-beta6.18
plzip/1.6
poppler-data/0.4.9
poppler/0.65.0
portaudio/190600_20161030
postgresql/9.5.3
postgresql/10.3
postgresql/11.0
postgresql/11.4
ppl/1.2
pplacer/1.1.alpha19
prank/170427
presentproto/1.0
printproto/1.0.5
prodigal/2.6.3
proj/4.9.2
proj/5.2.0
proj/6.3.1
protobuf/3.1.0
protobuf/3.2.0
protobuf/3.3.0
protobuf/3.5.1.1
python/2.7.14
python/3.6.4
qhull/2015.2
qrupdate/1.1.2
qt/5.10.0
r/3.4.3
r/3.5.1
r/4.0.2
ragel/6.10
randrproto/1.5.0
raptor/2.0.15
rasqal/0.9.33
readline/7.0
recordproto/1.14.2
renderproto/0.11.1
resourceproto/1.2.0
ruby/2.2.0
samtools/1.2
samtools/1.6
samtools/1.10
scala/2.12.1
scons/2.5.0
scons/3.0.1
scotch/6.0.3
scotch/6.0.4
scotch/6.0.6
sdl2/2.0.5
sed/4.2.2
seqtk/1.2
seqtk/1.3
setxkbmap/1.3.1
shared-mime-info/1.8
silo/4.10.2
snappy/1.1.7
sowing/1.1.23-p1
sparsehash/2.0.3
spglib/1.10.3
sqlite/3.18.0
sqlite/3.22.0
sqlite/3.30.0
sra-toolkit/2.8.1
sra-toolkit/2.8.2-1
sra-toolkit/2.9.2
sra-toolkit/2.10.5
star/2.5.3a
star/2.7.2d
sublime-text/2.0.2
subread/2.0.1
suite-sparse/5.1.0
superlu/5.2.1
swig/2.0.12
swig/3.0.10
swig/3.0.11
swig/3.0.12
sz/1.4.12.3
tar/1.29
tcl-tcllib/1.19
tcl/8.6.6
tcl/8.6.8
texinfo/6.3
texinfo/6.5
texlive/live
tk/8.6.6
tk/8.6.8
tmux/2.4
tmux/2.6
tophat/2.1.2
tree/1.7.0
trimmomatic/0.35
trimmomatic/0.36
udunits2/2.2.24
unison/2.48.4
units/2.13
unixodbc/2.3.4
unzip/6.0
util-linux/2.29.1
util-linux/2.29.2
util-macros/1.19.1
uuid/1.6.2
vcftools/0.1.14
velvet/1.2.10
videoproto/2.3.3
vim/8.0.0503
vim/8.0.1376
vim/8.1.1746
vmatch/2.3.0
wget/1.17
wget/1.19.1
wildmidi/0.4.2
wx/3.1.0
wxwidgets/3.1.0
xauth/1.0.9
xbitmaps/1.1.1
xcb-proto/1.12
xcb-proto/1.13
xcb-util-cursor/0.1.3
xcb-util-errors/1.0
xcb-util-image/0.4.0
xcb-util-keysyms/0.4.0
xcb-util-renderutil/0.3.9
xcb-util-wm/0.4.1
xcb-util/0.4.0
xerces-c/3.1.4
xextproto/7.3.0
xhost/1.0.7
xineramaproto/1.2.1
xkbcomp/1.3.1
xkbdata/1.0.1
xmgrace/5.1.25
xproto/7.0.29
xproto/7.0.31
xtrans/1.3.5
xz/5.2.3
yasm/1.3.0
zeromq/4.2.2
zip/3.0
zlib/1.2.11
zsh/5.1.1
zsh/5.4.2
zstd/1.3.0

Intel 19.1.0

This Intel toolchain is compatible with AMD CPUs (Euler VI, VII). Please use it if you intend to run codes compiled with Intel on Euler VI or VII nodes.

abaqus/2016
abaqus/2018
abaqus/2019
abaqus/2020
autoconf/2.69
automake/1.15
automake/1.15.1
automake/1.16.2
bison/3.0.4
bison/3.4.2
bzip2/1.0.6
bzip2/1.0.8
cuda/11.0.3
cudnn/8.0.5
curl/7.53.1
curl/7.59.0
curl/7.61.1
curl/7.72.0
expat/2.2.0
expat/2.2.2
expat/2.2.9
gdbm/1.13
gdbm/1.14.1
gdbm/1.18.1
gettext/0.19.8.1
gmp/6.1.2
libbsd/0.8.6
libbsd/0.10.0
libiconv/1.15
libiconv/1.16
libsigsegv/2.11
libsigsegv/2.12
libunistring/0.9.7
libxml2/2.9.4
libxml2/2.9.10
lua-luaposix/33.4.0
lua/5.3.4
m4/1.4.17
mawk/1.3.4
mpfr/3.1.5
mpfr/4.0.1
ncurses/6.0
nettle/3.2
nettle/3.3
patch/2.7.5
patch/2.7.6
pcre/8.40
pcre/8.41
pcre/8.43
pcre/8.44
perl/5.24.1
perl/5.32.0
pkg-config/0.29.2
pkgconf/1.4.0
pkgconf/1.7.3
readline/7.0
readline/8.0
subread/2.0.1
tar/1.29
tcl/8.6.6
tcl/8.6.8
tcl/8.6.10
unzip/6.0
xz/5.2.3
yasm/1.3.0
zlib/1.2.11

OpenMPI 3.0.1

GCC 4.8.5

ambertools/19
armadillo/9.700.2
arpack-ng/3.5.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
foam-extend/3.2
foam-extend/4.0
globalarrays/5.6.5
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
kahip/2.00
lammps/20190807
libcircle/0.2.1.-rc.1
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
molcas/19.11
mumps/5.1.1
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
openfoam-com/1806
openfoam-com/1906
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
paraview/5.0.1
paraview/5.4.1
parmetis/4.0.3
parmgridgen/1.0
petsc/3.8.4
petsc/3.9.4
petsc/3.10.5
pfft/1.0.8-alpha
pnfft/1.0.7-alpha
qbox/1.68.0
relion/3.0.7
scalasca/2.3.1
scorep/3.1
scotch/6.0.4
scotch/6.0.6
slepc/3.9.2
slepc/3.10.1
superlu-dist/4.3
superlu-dist/5.2.2
superlu-dist/6.1.1
trilinos/12.8.1
trilinos/12.10.1
trilinos/12.12.1
trilinos/12.14.1
visit/3.0.2
vtk/8.1.2
zoltan/3.83

GCC 6.3.0

armadillo/9.700.2
arpack-ng/3.5.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fenics/2019.1.0_slepc
fenics/2019.1.0
fftw/3.3.7
globalarrays/5.6.5
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
kahip/2.00
libcircle/0.2.1.-rc.1
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
parmetis/4.0.3
parmgridgen/1.0
petsc/3.8.4
petsc/3.9.4
petsc/3.10.5
pfft/1.0.8-alpha
pnfft/1.0.7-alpha
relion/3.0.7
scalasca/2.3.1
scorep/3.1
scotch/6.0.4
scotch/6.0.6
slepc/3.9.2
slepc/3.10.1
superlu-dist/4.3
superlu-dist/5.2.2
superlu-dist/6.1.1
trilinos/12.8.1
trilinos/12.10.1
trilinos/12.12.1
trilinos/12.14.1
vtk/8.1.2
zoltan/3.83

GCC 8.2.0

armadillo/9.700.2
arpack-ng/3.5.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
foam-extend/4.0
globalarrays/5.6.5
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
kahip/2.00
libcircle/0.2.1.-rc.1
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
netcdf-cxx4/4.3.0
netcdf/4.4.1.1
netlib-scalapack/2.0.2
openfoam-com/1806
openfoam-com/1906
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
paraview/5.4.1
parmetis/4.0.3
parmgridgen/1.0
petsc/3.8.4
petsc/3.9.4
petsc/3.10.5
pfft/1.0.8-alpha
pnfft/1.0.7-alpha
relion/3.0.7
scalasca/2.3.1
scotch/6.0.4
scotch/6.0.6
slepc/3.9.2
slepc/3.10.1
superlu-dist/4.3
superlu-dist/5.2.2
superlu-dist/6.1.1
trilinos/12.8.1
trilinos/12.10.1
trilinos/12.12.1
trilinos/12.14.1
vtk/8.1.2
zoltan/3.83

Intel 18.0.1

armadillo/9.700.2
arpack-ng/3.5.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
libcircle/0.2.1.-rc.1
libvdwxc/0.4.0
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
parmetis/4.0.3
parmgridgen/1.0
pfft/1.0.8-alpha
pnfft/1.0.7-alpha
relion/3.0.7
scalasca/2.3.1
scorep/3.1
scotch/6.0.4
scotch/6.0.6
superlu-dist/4.3
superlu-dist/5.2.2
superlu-dist/6.1.1

OpenMPI 4.0.2

GCC 4.8.5

armadillo/9.700.2
arpack-ng/3.5.0
arpack-ng/3.6.2
boost/1.63.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
hypre/2.15.0
kahip/2.00
libcircle/0.2.1.-rc.1
libvdwxc/0.4.0
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
mumps/5.1.2
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
netlib-scalapack/2.1.0
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
parmetis/4.0.3
petsc/3.10.5
pfft/1.0.8-alpha
plumed/2.3.3
pnfft/1.0.7-alpha
raxml/8.2.12
scotch/6.0.4
scotch/6.0.6
slepc/3.10.1
superlu-dist/5.2.2
superlu-dist/6.1.0
superlu-dist/6.1.1
superlu-dist/6.2.0
trilinos/12.14.1
vtk/8.1.2
zoltan/3.83

GCC 6.3.0

armadillo/9.700.2
arpack-ng/3.5.0
arpack-ng/3.6.2
boost/1.63.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
hypre/2.15.0
kahip/2.00
libcircle/0.2.1.-rc.1
libvdwxc/0.4.0
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
mumps/5.1.2
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
netlib-scalapack/2.1.0
octopus/10.0
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
parmetis/4.0.3
petsc/3.10.5
pfft/1.0.8-alpha
plumed/2.3.3
pnfft/1.0.7-alpha
raxml/8.2.12
scotch/6.0.4
scotch/6.0.6
slepc/3.10.1
spfft/0.9.10
superlu-dist/5.2.2
superlu-dist/6.1.0
superlu-dist/6.1.1
superlu-dist/6.2.0
trilinos/12.14.1
vtk/8.1.2
zoltan/3.83

GCC 8.2.0

armadillo/9.700.2
arpack-ng/3.5.0
arpack-ng/3.6.2
boost/1.63.0
boost/1.66.0
boost/1.68.0
boost/1.73.0
dtcmp/1.1.0
fftw/3.3.7
gmsh/4.4.1
hdf5/1.10.1
hmmer/3.1b2
hypre/2.12.1
hypre/2.13.0
hypre/2.14.0
hypre/2.15.0
kahip/2.00
libcircle/0.2.1.-rc.1
libvdwxc/0.4.0
lwgrp/1.0.2
matio/1.5.9
mdtest/1.9.3
mumps/5.1.1
mumps/5.1.2
netcdf-cxx4/4.3.0
netcdf-fortran/4.4.1
netcdf/4.4.1.1
netlib-scalapack/2.0.2
netlib-scalapack/2.1.0
parallel-netcdf/1.8.0
parallel-netcdf/1.9.0
parmetis/4.0.3
petsc/3.10.5
pfft/1.0.8-alpha
plumed/2.3.3
pnfft/1.0.7-alpha
raxml/8.2.12
scotch/6.0.4
scotch/6.0.6
slepc/3.10.1
spfft/0.9.10
superlu-dist/5.2.2
superlu-dist/6.1.0
superlu-dist/6.1.1
superlu-dist/6.2.0
trilinos/12.14.1
vtk/8.1.2
zoltan/3.83

MPICH 3.3.1

GCC 4.8.5

boost/1.66.0
fftw/3.3.7
hdf5/1.10.1
netcdf-fortran/4.4.1
netcdf/4.4.1.1
parallel-netcdf/1.8.0
spyking_circus/0.8.4
spyking_circus/0.9.0

Euler applications and libraries

Contents

Introduction

Module hierarchy

Core layer

Compiler layer

GCC 4.8.5

GCC 6.3.0

GCC 8.2.0

Intel 18.0.1

Intel 19.1.0

OpenMPI 3.0.1

GCC 4.8.5

GCC 6.3.0

GCC 8.2.0

Intel 18.0.1

OpenMPI 4.0.2

GCC 4.8.5

GCC 6.3.0

GCC 8.2.0

MPICH 3.3.1

GCC 4.8.5

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