FALCON

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Category

Bioinformatics, Aligner

Description

Falcon: a set of tools for fast aligning long reads for consensus and assembly. The Falcon tool kit is a set of simple code collection which I use for studying efficient assembly algorithm for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.

Available versions (Euler, old software stack)

Legacy versions Supported versions New versions
0.5.0

Environment modules (Euler, old software stack)

Version Module load command Additional modules loaded automatically
0.5.0 module load gcc/4.8.2 python/2.7.6 falcon/0.5.0 openblas/0.2.13_seq

License information

https://github.com/PacificBiosciences/FALCON-integrate

Links

https://github.com/PacificBiosciences/FALCON-integrate