FALCON

Category

Bioinformatics, Aligner

Description

Falcon: a set of tools for fast aligning long reads for consensus and assembly. The Falcon tool kit is a set of simple code collection which I use for studying efficient assembly algorithm for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.

Available versions (Euler, old software stack)

Legacy versions	Supported versions	New versions
		0.5.0

Please note that this page refers to installations from the old software stack. There are two software stacks on Euler. Newer versions of software are found in the new software stack.

Environment modules (Euler, old software stack)

Version	Module load command	Additional modules loaded automatically
0.5.0	module load gcc/4.8.2 python/2.7.6 falcon/0.5.0	openblas/0.2.13_seq

Please note that this page refers to installations from the old software stack. There are two software stacks on Euler. Newer versions of software are found in the new software stack.

License information

https://github.com/PacificBiosciences/FALCON-integrate

Links

https://github.com/PacificBiosciences/FALCON-integrate