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Welcome to the scientific computing wiki

This wiki is the primary source of information for the services provided by the ID SIS HPC group. We are operating and maintaining the central HPC clusters of ETH Zurich and provide services to our scientific community.

Euler II (left) and Euler I (right)

Important news

• 27 Sep 2019 — Script to run a Jupyter notebook interactively in a batch job on Euler or Leonhard Open
• 25 Mar 2019 — New CUDA 10 now available on Leonhard
• 19 Mar 2019 — Windows: PuTTY security updates
• 04 Mar 2019 — New unified quota wrapper for all our file systems on our clusters
• 08 Feb 2019 — New Nvidia DGX-1 deep learning server with Tensor Cores
• More...

Read me first

• Please use the menu on the left for navigating through the wiki
• A good starting point for new cluster users is our tutorials page, especially the getting started with clusters tutorial
• If you have problems connecting to our clusters or if a service is not working, then please check the news and the system status page of the wiki
• The LSF submission line advisor helps you to learn the syntax of the batch system
• If you have problems finding the answer to your question on the wiki, then please have a look at the FAQ, or use the search bar on the top right corner of the wiki
• The search of MediaWiki only shows results that are exact matches, except when using wildcards like for instance libcuda*
• We provide centrally installed applications and libraries
  • Old software stack on Euler and further information
  • New software stack on Euler
  • Software stack on Leonhard
• When contacting cluster support, then please try to provide all important information regarding your support request, such that we can help you to resolve issues as quick as possible

Most recent software installations

Twenty most recent software installation on each cluster

Euler (new software stack,see complete list):

Leonhard Open (see complete list):

superlu-dist/6.1.1 (intel 18.0.1, openmpi 3.0.1) superlu-dist/6.1.1 (gcc 8.2.0, openmpi 3.0.1) superlu-dist/6.1.1 (gcc 6.3.0, openmpi 3.0.1) superlu-dist/6.1.1 (gcc 4.8.5, openmpi 3.0.1) tetgen/1.5.0 (gcc 8.2.0) tetgen/1.5.0 (gcc 6.3.0) tetgen/1.5.0 (gcc 4.8.5) zstd/1.3.0 (gcc 4.8.5) zsh/5.4.2 (gcc 4.8.5) zlib/1.2.9 (gcc 4.8.5) zlib/1.2.11 (gcc 4.8.5) zip/3.0 (gcc 4.8.5) zeromq/4.2.2 (gcc 4.8.5) yasm/1.3.0 (gcc 4.8.5) xz/5.2.3 (gcc 4.8.5) xtrans/1.3.5 (gcc 4.8.5) xproto/7.0.31 (gcc 4.8.5) xpdf/4.01.01 (gcc 4.8.5) xmgrace/5.1.25 (gcc 4.8.5) xkbdata/1.0.1 (gcc 4.8.5)

rna-seqc/1.1.8 (intel 18.0.1) rna-seqc/1.1.8 (gcc 8.2.0) rna-seqc/1.1.8 (gcc 6.3.0) rna-seqc/1.1.8 (gcc 4.8.5) picard/2.18.17 (intel 18.0.1) picard/2.18.17 (gcc 8.2.0) picard/2.18.17 (gcc 6.3.0) picard/2.18.17 (gcc 4.8.5) somatic-sniper/1.0.5.0 (intel 18.0.1) somatic-sniper/1.0.5.0 (gcc 8.2.0) somatic-sniper/1.0.5.0 (gcc 6.3.0) somatic-sniper/1.0.5.0 (gcc 4.8.5) multiqc/1.8 (gcc 4.8.5) snpeff/4.3t (intel 18.0.1) snpeff/4.3t (gcc 8.2.0) snpeff/4.3t (gcc 6.3.0) snpeff/4.3t (gcc 4.8.5) blat/36 (intel 18.0.1) blat/36 (gcc 8.2.0) blat/36 (gcc 6.3.0)