Python on Euler
From ScientificComputing
Contents
Python packages on Euler
List of all Python packages available on Euler. For some Python installations within a toolchain, there exists a python and a python_gpu module that points to the same Python installation. The main difference between the installations is that the python_gpu module automatically loads a cuda, a cudnn and an nccl module.
GCC 4.8.5
python/2.7.14
- 3to2 1.1.1
- appdirs 1.4.3
- attmap 0.12.11
- biopython 1.73
- Bottleneck 1.0.0
- certifi 2021.10.8
- chardet 3.0.4
- contextlib2 0.6.0.post1
- cycler 0.10.0
- Cython 0.28.1
- DeepARG 1.0.2
- enum34 1.1.6
- ete3 3.1.2
- functools32 3.2.3.post2
- gdbn 0.1
- gnumpy 0.2
- hypothesis 3.7.0
- idna 2.6
- importlib-resources 3.3.1
- joblib 0.13.0
- Keras 2.0.3
- Lasagne 0.1
- lit 0.5.0
- macsyfinder 1.0.5
- Mako 1.0.4
- MarkupSafe 1.0
- mock 2.0.0
- nolearn 0.6.0
- nose 1.3.7
- numexpr 2.6.1
- numpy 1.13.3
- packaging 17.1
- pandas 0.21.1
- pathlib2 2.3.7.post1
- pbr 3.1.1
- PIL 1.1.7
- pip 20.3.4
- piper 0.10.0
- psutil 5.4.8
- py 1.4.33
- pyahocorasick 1.1.13.1
- pyfastx 0.5.4
- pyparsing 2.2.0
- pytest 3.0.7
- python-dateutil 2.5.2
- pytz 2017.2
- PyYAML 5.4.1
- requests 2.18.4
- scandir 1.10.0
- scikit-learn 0.18.1
- scipy 1.0.0
- setuptools 39.0.1
- singledispatch 3.7.0
- six 1.11.0
- subprocess32 3.2.7
- tabulate 0.8.9
- Theano 0.8.2
- tqdm 4.64.0
- typing 3.10.0.0
- ubiquerg 0.6.2
- urllib3 1.22
- wget 3.2
- wheel 0.29.0
- zipp 1.2.0
python/3.6.4
- 3to2 1.1.1
- absl-py 0.14.0
- appdirs 1.4.3
- astor 0.8.1
- Bottleneck 1.0.0
- cached-property 1.5.2
- cycler 0.10.0
- Cython 0.29.21
- dataclasses 0.8
- decorator 4.4.0
- gast 0.2.2
- google-pasta 0.2.0
- grpcio 1.40.0
- h5py 3.1.0
- hypothesis 3.7.0
- imageio 2.5.0
- importlib-metadata 4.8.1
- Keras 2.0.3
- Keras-Applications 1.0.8
- Keras-Preprocessing 1.1.2
- kiwisolver 1.1.0
- lit 0.5.0
- Mako 1.0.4
- Markdown 3.3.4
- MarkupSafe 1.0
- matplotlib 3.0.3
- mock 2.0.0
- networkx 2.3
- nose 1.3.7
- numexpr 2.6.1
- numpy 1.13.3
- opt-einsum 3.3.0
- packaging 17.1
- pandas 0.21.1
- pbr 3.1.1
- Pillow 6.0.0
- pip 21.2.4
- protobuf 3.18.0
- py 1.4.33
- pyparsing 2.2.0
- pytest 3.0.7
- python-dateutil 2.5.2
- pytz 2017.2
- PyWavelets 1.0.3
- PyYAML 3.11
- scikit-image 0.15.0
- scikit-learn 0.18.1
- scipy 1.0.0
- setuptools 58.1.0
- six 1.11.0
- tensorboard 1.15.0
- tensorflow-estimator 1.15.1
- termcolor 1.1.0
- Theano 1.0.1
- tinyarray 1.2.1
- typing-extensions 3.10.0.2
- Werkzeug 2.0.1
- wheel 0.29.0
- wrapt 1.12.1
- zipp 3.5.0
python/3.6.5
- olefile (0.46)
- Pillow (4.2.0)
- pip (9.0.3)
- scipy (0.19.0)
- setuptools (50.3.2)
- six (1.11.0)
- torch (0.4.0)
- torchaudio (0.2)
- torchvision (0.2.0)
python/3.6.6
python/3.7.4
- absl-py 0.8.0
- alabaster 0.7.12
- anndata 0.6.22.post1
- appdirs 1.4.3
- argh 0.26.2
- args 0.1.0
- ase 3.19.1
- astor 0.8.0
- atomicwrites 1.3.0
- attrs 19.2.0
- audioread 2.1.8
- Automat 20.2.0
- Babel 2.7.0
- backcall 0.1.0
- bgen-reader 4.0.5
- bids-validator 1.2.4
- biopython 1.76
- bleach 3.1.0
- blosc 1.8.1
- bokeh 1.3.4
- boto 2.49.0
- boto3 1.14.40
- botocore 1.17.40
- cachetools 4.1.1
- certifi 2019.9.11
- cffi 1.14.1
- cftime 1.0.3.4
- chardet 3.0.4
- checkm-genome 1.1.2
- citeproc-py 0.4.0
- Click 7.0
- clint 0.5.1
- cloudpickle 1.2.2
- colorama 0.4.1
- colored-logs 0.2.6
- coloredlogs 15.0
- colorlover 0.3.0
- colormath 3.0.0
- ConfigArgParse 0.14.0
- constantly 15.1.0
- cryptography 3.4.8
- cssselect 1.1.0
- cutadapt 4.0
- cycler 0.10.0
- Cython 0.29.13
- dask 2.22.0
- datrie 0.8
- decorator 4.4.0
- deepdiff 4.0.7
- deepTools 3.3.2
- deeptoolsintervals 0.1.9
- defusedxml 0.6.0
- demes 0.1.2
- DendroPy 4.4.0
- dill 0.3.1.1
- dnaio 0.8.1
- docopt 0.6.2
- docutils 0.15.2
- duecredit 0.7.0
- eggnog-mapper 2.1.6
- entrypoints 0.3
- etelemetry 0.1.2
- fastalite 0.3
- filelock 3.0.12
- Flask 1.1.2
- flit 1.3
- fsspec 0.8.0
- funcsigs 1.0.2
- future 0.17.1
- gast 0.3.2
- gdown 3.13.0
- gensim 3.8.3
- gitdb 0.6.4
- gitdb2 2.0.6
- GitPython 3.0.3
- grabbit 0.2.6
- graphtools 1.1.0
- grpcio 1.24.1
- gtdbtk 1.5.1
- h2 3.2.0
- h5py 2.10.0
- holoviews 1.12.3
- hpack 3.0.0
- html5lib 1.0.1
- humanfriendly 9.1
- hyperframe 5.2.0
- hyperlink 21.0.0
- hyperopt 0.1.2
- idna 2.8
- imageio 2.6.1
- imagesize 1.1.0
- importlib-metadata 4.13.0
- incremental 21.3.0
- iniconfig 1.0.1
- ipykernel 5.1.2
- ipython 7.8.0
- ipython-genutils 0.2.0
- ipywidgets 7.5.1
- isal 0.11.1
- isodate 0.6.0
- itemadapter 0.4.0
- itemloaders 1.0.4
- itsdangerous 1.1.0
- jedi 0.15.1
- Jinja2 2.10.1
- jmespath 0.10.0
- joblib 0.14.0
- jsonpickle 1.2
- jsonschema 3.0.2
- jupyter 1.0.0
- jupyter-client 5.3.3
- jupyter-console 6.0.0
- jupyter-contrib-core 0.3.3
- jupyter-contrib-nbextensions 0.5.1
- jupyter-core 4.5.0
- jupyter-highlight-selected-word 0.2.0
- jupyter-latex-envs 1.4.6
- jupyter-nbextensions-configurator 0.4.1
- Keras 2.3.1
- Keras-Applications 1.0.8
- Keras-Preprocessing 1.1.0
- kiwisolver 1.1.0
- kneaddata 0.10.0
- kopt 0.1.0
- librosa 0.7.0
- llvmlite 0.26.0
- locket 0.2.0
- lxml 4.4.1
- lzstring 1.0.4
- Markdown 3.1.1
- MarkupSafe 1.1.1
- matplotlib 3.4.3
- mistune 0.8.4
- mock 3.0.5
- more-itertools 7.2.0
- mpi4py 3.0.2
- mpmath 1.1.0
- msprime 1.0.2
- multiqc 1.9
- natsort 6.0.0
- nbconvert 5.6.0
- nbformat 4.4.0
- networkx 2.3
- neurdflib 5.0.0.post1
- newick 1.3.0
- nibabel 2.5.1
- nilearn 0.5.2
- nipy 0.4.2
- nipype 1.2.3
- nltk 3.5
- nose 1.3.7
- notebook 6.0.1
- num2words 0.5.10
- numba 0.41.0
- numexpr 2.7.0
- numpy 1.19.1
- numpydoc 0.9.2
- obspy 1.2.1
- opencv-python 4.7.0.68
- ordered-set 3.1.1
- orfipy 0.0.4
- packaging 19.2
- pandas 0.25.1
- pandocfilters 1.4.2
- param 1.9.3
- parsel 1.6.0
- parso 0.5.1
- partd 1.1.0
- patsy 0.5.1
- pbr 5.4.3
- pexpect 4.7.0
- pickleshare 0.7.5
- Pillow 6.2.0
- pip 21.2.4
- plotly 4.1.1
- pluggy 0.13.0
- ply 3.11
- priority 1.3.0
- prometheus-client 0.7.1
- prompt-toolkit 2.0.10
- Protego 0.1.16
- protobuf 3.10.0
- prov 1.5.3
- psutil 5.7.0
- psycopg2-binary 2.9.3
- ptyprocess 0.6.0
- py 1.9.0
- py2bit 0.3.0
- pyahocorasick 1.4.4
- pyasn1 0.4.8
- pyasn1-modules 0.2.8
- pybids 0.9.4
- pyBigWig 0.3.17
- pybind11 2.10.3
- pybind11-global 2.10.3
- pycparser 2.20
- PyDispatcher 2.0.5
- pydot 1.4.1
- pydotplus 2.0.2
- pyfastx 0.8.4
- Pygments 2.4.2
- PyGSP 0.5.1
- pymongo 3.9.0
- pyOpenSSL 20.0.1
- pyparsing 2.4.2
- PyQt5 5.10
- pyrsistent 0.15.4
- pysam 0.15.4
- PySocks 1.7.1
- pytest 6.0.1
- pytest-runner 5.2
- python-dateutil 2.8.0
- pytoml 0.1.21
- pytz 2019.2
- PyUtilib 5.7.1
- pyutillib 0.3.0
- pyviz-comms 0.7.6
- PyWavelets 1.0.3
- PyYAML 5.1.2
- pyzmq 18.1.0
- qtconsole 4.5.5
- QtPy 1.9.0
- queuelib 1.6.2
- ratelimiter 1.2.0.post0
- rdflib 4.2.2
- regex 2020.7.14
- reportseff 2.7.3
- requests 2.22.0
- resampy 0.2.2
- retrying 1.3.3
- ruamel.yaml 0.16.5
- ruamel.yaml.clib 0.2.0
- s3transfer 0.3.3
- scikit-image 0.15.0
- scikit-learn 0.21.3
- scikit-posthocs 0.6.7
- scipy 1.3.1
- Scrapy 2.5.0
- seaborn 0.9.0
- Send2Trash 1.5.0
- service-identity 21.1.0
- setuptools 41.2.0
- simplegeneric 0.8.1
- simplejson 3.16.0
- sip 4.19.8
- six 1.12.0
- sktime 0.3.1
- smart-open 2.1.0
- smcpp 1.15.3
- smmap 0.9.0
- smmap2 2.0.5
- snakemake 5.7.0
- snowballstemmer 2.0.0
- SoundFile 0.10.3.post1
- spectra 0.0.11
- Sphinx 2.2.0
- sphinxcontrib-applehelp 1.0.1
- sphinxcontrib-devhelp 1.0.1
- sphinxcontrib-htmlhelp 1.0.2
- sphinxcontrib-jsmath 1.0.1
- sphinxcontrib-qthelp 1.0.2
- sphinxcontrib-serializinghtml 1.1.3
- sphinxcontrib-websupport 1.1.2
- SQLAlchemy 1.3.10
- statsmodels 0.10.1
- svgwrite 1.4.1
- sympy 1.4
- tables 3.5.2
- tasklogger 1.0.0
- taxtastic 0.9.2
- templateflow 0.6.2
- termcolor 1.1.0
- terminado 0.8.2
- testpath 0.4.2
- texttable 1.6.2
- Theano 1.0.4
- toml 0.10.1
- toolz 0.10.0
- torch 1.2.0+cpu
- torchvision 0.4.0+cpu
- tornado 6.0.3
- tqdm 4.48.2
- traitlets 4.3.3
- traits 5.1.2
- tskit 0.3.7
- Twisted 21.7.0
- typing-extensions 3.10.0.2
- urllib3 1.25.6
- w3lib 1.22.0
- wcwidth 0.1.7
- webencodings 0.5.1
- Werkzeug 0.16.0
- wheel 0.33.6
- widgetsnbextension 3.5.1
- wrapt 1.11.2
- xarray 0.16.0
- XlsxWriter 1.4.3
- xopen 1.5.0
- zipp 0.6.0
- zope.interface 5.4.0
GCC 6.3.0
python/2.7.14
- attmap (0.13.2)
- biopython (1.73)
- Bottleneck (1.0.0)
- certifi (2021.10.8)
- chardet (3.0.4)
- contextlib2 (0.6.0.post1)
- cycler (0.10.0)
- Cython (0.28.1)
- DeepARG (1.0.2)
- enum34 (1.1.6)
- ete3 (3.1.2)
- functools32 (3.2.3.post2)
- gdbn (0.1)
- gnumpy (0.2)
- hypothesis (3.7.0)
- idna (2.6)
- importlib-resources (3.3.1)
- joblib (0.13.0)
- Keras (2.0.3)
- Lasagne (0.1)
- lit (0.5.0)
- Mako (1.0.4)
- MarkupSafe (1.0)
- mock (2.0.0)
- nolearn (0.6.0)
- nose (1.3.7)
- numexpr (2.6.1)
- numpy (1.13.3)
- packaging (17.1)
- pandas (0.21.1)
- pathlib2 (2.3.7.post1)
- pbr (3.1.1)
- PIL (1.1.7)
- pip (9.0.1)
- py (1.4.33)
- pyparsing (2.2.0)
- pytest (3.0.7)
- python-dateutil (2.5.2)
- pytz (2017.2)
- PyYAML (3.11)
- requests (2.18.4)
- scandir (1.10.0)
- scikit-learn (0.18.1)
- scipy (1.0.0)
- setuptools (39.0.1)
- singledispatch (3.7.0)
- six (1.11.0)
- subprocess32 (3.2.7)
- tabulate (0.8.9)
- Theano (0.8.2)
- tqdm (4.64.0)
- typing (3.10.0.0)
- ubiquerg (0.6.2)
- urllib3 (1.22)
- wget (3.2)
- wheel (0.29.0)
- zipp (1.2.0)
python/3.6.4
- Bottleneck (1.0.0)
- cycler (0.10.0)
- Cython (0.28.1)
- hypothesis (3.7.0)
- Keras (2.0.3)
- lit (0.5.0)
- Mako (1.0.4)
- MarkupSafe (1.0)
- mock (2.0.0)
- nose (1.3.7)
- numexpr (2.6.1)
- numpy (1.13.3)
- packaging (17.1)
- pandas (0.21.1)
- pbr (3.1.1)
- Pillow (3.2.0)
- pip (9.0.1)
- py (1.4.33)
- pyparsing (2.2.0)
- pytest (3.0.7)
- python-dateutil (2.5.2)
- pytz (2017.2)
- PyYAML (3.11)
- scikit-learn (0.18.1)
- scipy (1.0.0)
- setuptools (39.0.1)
- six (1.11.0)
- Theano (1.0.1)
- torch (1.1.0)
- wheel (0.29.0)
python/3.6.5
- docutils 0.18.1
- numpy 1.14.5
- pip 21.3.1
- setuptools 50.3.2
- torch 0.4.0
python/3.6.6
python/3.7.4
- absl-py 0.8.1
- alabaster 0.7.12
- anndata 0.6.22.post1
- appdirs 1.4.3
- argh 0.26.2
- assembly-stats 0.1.4
- astor 0.8.0
- atomicwrites 1.3.0
- attrs 19.3.0
- Babel 2.7.0
- backcall 0.1.0
- bgen-reader 4.0.5
- bids-validator 1.2.4
- bleach 3.1.0
- blosc 1.8.1
- bokeh 1.4.0
- boto 2.49.0
- boto3 1.14.40
- botocore 1.17.40
- cachetools 4.0.0
- certifi 2019.9.11
- cffi 1.14.1
- cftime 1.0.4.2
- chardet 3.0.4
- checkm-genome 1.1.2
- citeproc-py 0.4.0
- Click 7.0
- click-plugins 1.1.1
- cligj 0.5.0
- clize 4.1.1
- cloudpickle 1.2.2
- colorama 0.4.1
- coloredlogs 15.0
- colorlover 0.3.0
- colormath 3.0.0
- ConfigArgParse 0.15.1
- cupy-cuda101 9.5.0
- cycler 0.10.0
- Cython 0.29.13
- dask 2.22.0
- datrie 0.8
- decorator 4.4.1
- deepdiff 4.0.8
- deepTools 3.5.0
- deeptoolsintervals 0.1.9
- defusedxml 0.6.0
- DendroPy 4.4.0
- descartes 1.1.0
- dill 0.3.1.1
- distributed 2.16.0
- docopt 0.6.2
- docutils 0.15.2
- duecredit 0.7.0
- entrypoints 0.3
- et-xmlfile 1.0.1
- etelemetry 0.1.2
- fastrlock 0.6
- fenics-dijitso 2019.1.0
- fenics-dolfin 2019.1.0
- fenics-ffc 2019.1.0
- fenics-fiat 2019.1.0
- fenics-ufl 2019.1.0
- filelock 3.0.12
- Fiona 1.8.17
- flit 1.3
- fsspec 0.8.0
- ftputil 4.0.0
- funcsigs 1.0.2
- future 0.18.2
- gast 0.2.2
- gensim 3.8.3
- geographiclib 1.50
- geopandas 0.8.1
- geopy 2.0.0
- gitdb 0.6.4
- gitdb2 2.0.6
- GitPython 3.0.4
- google-auth 1.10.1
- google-auth-oauthlib 0.4.1
- google-pasta 0.1.8
- gprMax 3.1.5
- grabbit 0.2.6
- graphtools 1.3.1
- grpcio 1.24.3
- h5py 2.10.0
- HeapDict 1.0.1
- html5lib 1.0.1
- humanfriendly 9.1
- hyperopt 0.2.2
- hypothesis 5.41.3
- idna 2.8
- imageio 2.6.1
- imageio-ffmpeg 0.4.2
- imagesize 1.1.0
- imbalanced-learn 0.7.0
- importlib-metadata 4.13.0
- iniconfig 0.0.0
- ipykernel 5.1.3
- ipython 7.9.0
- ipython-genutils 0.2.0
- ipywidgets 7.5.1
- isodate 0.6.0
- jax 0.1.69
- jaxlib 0.1.47
- jdcal 1.4.1
- jedi 0.15.1
- Jinja2 2.10.3
- jmespath 0.10.0
- joblib 0.14.0
- jsonpickle 1.2
- jsonschema 3.1.1
- julia 0.5.6
- jupyter 1.0.0
- jupyter-client 5.3.4
- jupyter-console 6.0.0
- jupyter-contrib-core 0.3.3
- jupyter-contrib-nbextensions 0.5.1
- jupyter-core 4.6.1
- jupyter-highlight-selected-word 0.2.0
- jupyter-latex-envs 1.4.6
- jupyter-nbextensions-configurator 0.4.1
- Keras 2.3.1
- Keras-Applications 1.0.8
- Keras-Preprocessing 1.1.0
- kiwisolver 1.1.0
- kneaddata 0.10.0
- kopt 0.1.0
- llvmlite 0.39.1
- locket 0.2.0
- lxml 4.4.1
- lzstring 1.0.4
- MACS2 2.2.7.1
- mappy 2.17
- Markdown 3.1.1
- MarkupSafe 1.1.1
- matplotlib 3.1.1
- mistune 0.8.4
- mlxtend 0.17.3
- mock 3.0.5
- more-itertools 7.2.0
- mpi4py 3.0.2
- mpmath 1.1.0
- mpyq 0.2.5
- msgpack 1.0.0
- mshr 2019.1.0
- multiqc 1.9
- munch 2.5.0
- natsort 6.0.0
- nbconvert 5.6.1
- nbformat 4.4.0
- netCDF4 1.5.6
- networkx 2.2
- neurdflib 5.0.0.post1
- nibabel 2.5.1
- nilearn 0.5.2
- nipy 0.4.2
- nipype 1.2.3
- nltk 3.5
- nose 1.3.7
- notebook 6.0.1
- num2words 0.5.10
- numba 0.56.4
- numexpr 2.7.0
- numpy 1.19.1
- numpydoc 1.1.0
- oauthlib 3.1.0
- od 1.0
- ont-tombo 1.5.1
- openpyxl 3.0.4
- opt-einsum 3.1.0
- ordered-set 3.1.1
- packaging 19.2
- pandapower 2.2.2
- pandas 0.25.2
- pandoc 1.0.2
- pandocfilters 1.4.2
- parso 0.5.1
- partd 1.1.0
- patsy 0.5.1
- pbr 5.4.3
- pexpect 4.7.0
- pickleshare 0.7.5
- Pillow 6.2.1
- Pint 0.14
- pip 19.3.1
- pkgconfig 1.5.1
- plotly 4.2.1
- pluggy 0.13.0
- ply 3.11
- portpicker 1.3.1
- prometheus-client 0.7.1
- prompt-toolkit 2.0.10
- protobuf 3.10.0
- prov 1.5.3
- psutil 5.6.4
- ptyprocess 0.6.0
- py 1.9.0
- py2bit 0.3.0
- pyasn1 0.4.8
- pyasn1-modules 0.2.8
- pybids 0.9.4
- pyBigWig 0.3.17
- pybind11 2.2.4
- pycparser 2.20
- pydot 1.4.1
- pydotplus 2.0.2
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python/3.6.6