STAR
From ScientificComputing
Contents
Category
Bioinformatics, AlignerDescription
STAR is an alignment tool for RNA-seq, developed by Alexander Dobin et al. STAR is implemented as a standalone C++ code.Available versions (Euler, old software stack)
| Legacy versions | Supported versions | New versions |
|---|---|---|
| 2.4.2a, 2.5.3a |
Environment modules (Euler, old software stack)
| Version | Module load command | Additional modules loaded automatically |
|---|---|---|
| 2.4.2a | module load gcc/4.8.2 star/2.4.2a | |
| 2.5.3a | module load gcc/4.8.2 star/2.5.3a |
How to submit a job
You can submit a STAR job in batch mode with the following command:bsub [LSF options] "STAR [STAR options]"Here you need to replace [STAR options] with STAR command line options (please have a look at the STAR manual for getting a list of all command line options) and [LSF options] with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the batch system.
