DescriptionSubread is a general-purpose read aligner which can align both genomic DNA-seq and RNA-seq reads. It can also be used to discover genomic mutations including short indels and structural variants.
Available versions (Euler, old software stack)
|Legacy versions||Supported versions||New versions|
Environment modules (Euler, old software stack)
|Version||Module load command||Additional modules loaded automatically|
|1.5.0||module load gcc/4.8.2 subread/1.5.0|
How to submit a jobYou can submit a subread job in batch mode with the following command:
bsub [LSF options] "[executable] [options]"
where you need to replace [LSF options] with LSF parameters for the resource requirements of the job. Please find a documentation about the parameters of bsub on the wiki page about the batch system.
Here [executable] is one of the following executables:
exactSNP, featureCounts, subindel, subjunc, subread-align, subread-buildindexand [options] needs to be replaced by subread command line options.