You can submit a subread job in batch mode with the following command:
sbatch [Slurm options] --wrap="[executable] [options]"
Here you need to replace [Slurm options] with Slurm parameters for the resource requirements of the job. Please find a documentation about the parameters of sbatch on the wiki page about the batch system.
Here [executable] is one of the following executables:
exactSNP, featureCounts, subindel, subjunc, subread-align, subread-buildindex
and [options] needs to be replaced by subread command line options.